View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19776_high_43 (Length: 280)

Name: NF19776_high_43
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19776_high_43
NF19776_high_43
[»] chr7 (4 HSPs)
chr7 (19-268)||(44871934-44872183)
chr7 (63-234)||(44871846-44872014)
chr7 (21-114)||(44872137-44872230)
chr7 (175-267)||(44871889-44871981)
[»] chr3 (12 HSPs)
chr3 (22-239)||(47527599-47527816)
chr3 (58-189)||(47527583-47527714)
chr3 (19-176)||(47527797-47527951)
chr3 (19-221)||(47527482-47527687)
chr3 (119-216)||(47522226-47522323)
chr3 (95-220)||(47522288-47522413)
chr3 (20-239)||(47527866-47528082)
chr3 (58-267)||(47527904-47528110)
chr3 (128-261)||(47527778-47527911)
chr3 (58-231)||(47522145-47522315)
chr3 (34-113)||(47527389-47527468)
chr3 (91-166)||(47549704-47549782)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 44871934 - 44872183
Alignment:
Q  19 ctttcgactgtaatggagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44871934 ctttcgactgtaatggagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgt 44872033  T
Q  119 tgttgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaattgatgttgctgctgtttcctcggattctcccggtcgc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44872034 tgttgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaattgatgttgctgctgtttcctcggattctcccggtcgc 44872133  T
Q  219 tccttcaactgtaatgcagacaaagtaaatgctcttgttactgcttcctt 268  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  44872134 tccttcgactgtaatgcagacaaagtaaatgctcttgctactgcttcctt 44872183  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 234
Target Start/End: Original strand, 44871846 - 44872014
Alignment:
Q  63 tcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgttgttgttgctgcttcctcggattttctcagttgctctttcgact 162  Q
    ||||| |||||||| |||||| ||||||| |||||| |||||||| |||||| || || ||   || |||||| ||||| | |||||  |||||||||||    
T  44871846 tcctcagattctctgggttgctctttcaaatgtaattgagaagaataaattgatgctgctg---cttcttccttggattctttcagtctctctttcgact 44871942  T
Q  163 gtaaaggaggcaaataaattgatgttgctgctgtttcctcggattctcccggtcgctccttcaactgtaatg 234  Q
    |||| |||| |||| ||| || | | ||| ||| |||||||||||||| |||| || | |||||||||||||    
T  44871943 gtaatggagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcactttcaactgtaatg 44872014  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 44872137 - 44872230
Alignment:
Q  21 ttcgactgtaatggagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattg 114  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||||| ||||| |||| || |   |||||||||||||| ||| ||| ||||||    
T  44872137 ttcgactgtaatgcagacaaagtaaatgctcttgctactgcttccttggattttctctgtcgttttttcaactgtaatgcagaggaaaaaattg 44872230  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 44871889 - 44871981
Alignment:
Q  175 aataaattgatgttgctgctgtttcctcggattctcccggtcgctccttcaactgtaatgcagacaaagtaaatgctcttgttactgcttcct 267  Q
    |||||||||||| |||||||  ||||| |||||||  | ||| ||| ||| ||||||||| |||||||| ||||||||| | |||||||||||    
T  44871889 aataaattgatgctgctgcttcttccttggattctttcagtctctctttcgactgtaatggagacaaagaaaatgctctagctactgcttcct 44871981  T

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Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 47527816 - 47527599
Alignment:
Q  22 tcgactgtaatggagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgttgt 121  Q
    ||||||| |||||||||||||||||| |||| ||||||| | ||||||||||  ||||||||||||||| |||||||||||| ||| | ||   || | |    
T  47527816 tcgactgaaatggagacaaagaaaatcctcttgctactgatacctcggattccttcggttgcactttcagctgtaatggagatgaatatat---tgatat 47527720  T
Q  122 tgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaa---ttgatgttgctgctgtttcctcggattctcccggtcgc 218  Q
    || |||||||||||| |||| ||||||| |||||||||||||||| |||| |||| |||   ||| ||||||||||| |||| ||||||||| | || ||    
T  47527719 tgctgctgcttcctcagattctctcagtcgctctttcgactgtaatggagacaaagaaattgttgttgttgctgctgcttccacggattctctcagttgc 47527620  T
Q  219 tccttcaactgtaatgcagac 239  Q
    || ||| ||||||||| ||||    
T  47527619 tcattcgactgtaatggagac 47527599  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 189
Target Start/End: Complemental strand, 47527714 - 47527583
Alignment:
Q  58 ctgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgttgttgttgctgcttcctcggattttctcagttgctcttt 157  Q
    |||||||||| ||||||||| || || ||||| |||||||||||||  ||||||||| |||||||| |||||||||| |||||| |||||||||||| ||    
T  47527714 ctgcttcctcagattctctcagtcgctctttcgactgtaatggagacaaagaaattgttgttgttgctgctgcttccacggattctctcagttgctcatt 47527615  T
Q  158 cgactgtaaaggaggcaaataaattgatgttg 189  Q
    ||||||||| |||| | |||| ||||||||||    
T  47527614 cgactgtaatggagaccaatatattgatgttg 47527583  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 47527951 - 47527797
Alignment:
Q  19 ctttcgactgtaatggagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgt 118  Q
    ||||||||||||||||||||||  ||||||||||  ||| ||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||   |||    
T  47527951 ctttcgactgtaatggagacaagtaaaatgctcttactaatgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaat---tgt 47527855  T
Q  119 tgttgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaa 176  Q
    ||||| ||||||||| || |||  ||||||| ||||  ||||||| || |||| ||||    
T  47527854 tgttgctgctgcttcatcagatgctctcagtcgctcaatcgactgaaatggagacaaa 47527797  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 47527687 - 47527482
Alignment:
Q  19 ctttcgactgtaatggagacaaagaaaatgctctag---ctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgc 115  Q
    ||||||||||||||||||||||||||| || | | |   || |||||||| ||||||||||| ||||| | ||| |||||||||||||  || | ||||     
T  47527687 ctttcgactgtaatggagacaaagaaattgttgttgttgctgctgcttccacggattctctcagttgctcattcgactgtaatggagaccaatatattga 47527588  T
Q  116 tgttgttgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaattgatgttgctgctgtttcctcggattctcccggt 215  Q
    |||||||||  || |||||||||||| |||| |||||||||  ||  |||||   | | |||||||||||||||||||||||||||| |||| || | ||    
T  47527587 tgttgttgtcacttcttcctcggattctctcggttgctcttcagaaagtaaacaggacgaataaattgatgttgctgctgtttcctcagattttctctgt 47527488  T
Q  216 cgctcc 221  Q
    ||||||    
T  47527487 cgctcc 47527482  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 47522323 - 47522226
Alignment:
Q  119 tgttgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaattgatgttgctgctgtttcctcggattctcccggtc 216  Q
    ||||| ||||||||||| ||||| |||| || |||||||||| |||||||||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  47522323 tgttgctgctgcttcctgggattctctcggtagctctttcgattgtaaaggagacgaataaattgatattgctgctgtttcctcagattctctcggtc 47522226  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 47522413 - 47522288
Alignment:
Q  95 taatggagaagaagaaattgctgttgttgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaattgatgttgctgct 194  Q
    |||||||||  |||||||||  |||| || |||| | |||||||||| |||||||| |||||||||| | || |||| | |||| |||||||||||||||    
T  47522413 taatggagacaaagaaattgtagttgctgctgcttcctcctcggattctctcagtttctctttcgacggcaatggagaccaatagattgatgttgctgct 47522314  T
Q  195 gtttcctcggattctcccggtcgctc 220  Q
    | ||||| |||||||| |||| ||||    
T  47522313 gcttcctgggattctctcggtagctc 47522288  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 47528082 - 47527866
Alignment:
Q  20 tttcgactgtaatggagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgtt 119  Q
    ||||| |||||||||||||| ||||| || | | | | ||||||| || |||||||||  |||| |||| | |||||||||| | ||| ||||   |  |    
T  47528082 tttcggctgtaatggagacagagaaattgtttttgatgctgcttcatcagattctctccattgctcttttatctgtaatggaaacgaataaat---taat 47527986  T
Q  120 gttgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaattgatgttgctgctgtttcctcggattctcccggtcgct 219  Q
    |||| ||||||||||||| ||| || |||| |||||||||||||||| |||| ||| |||| || | || ||  || |||||| ||||||| |||| |||    
T  47527985 gttgctgctgcttcctcgcattctcgcagtcgctctttcgactgtaatggagacaagtaaaatgctcttactaatgcttcctcagattctctcggttgct 47527886  T
Q  220 ccttcaactgtaatgcagac 239  Q
    | ||||||||||||| ||||    
T  47527885 ctttcaactgtaatggagac 47527866  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 267
Target Start/End: Complemental strand, 47528110 - 47527904
Alignment:
Q  58 ctgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgttgttgttgctgcttcctcggattttctcagttgctcttt 157  Q
    ||||||||||||||||  | ||||||  ||||  ||||||||||||   ||||||||   || ||| ||||||||| || |||| ||||  |||||||||    
T  47528110 ctgcttcctcggattcatttggttgctttttcggctgtaatggagacagagaaattg---tttttgatgctgcttcatcagattctctccattgctcttt 47528014  T
Q  158 cgactgtaaaggaggcaaataaattgatgttgctgctgtttcctcggattctcccggtcgctccttcaactgtaatgcagacaaagtaaatgctcttgtt 257  Q
       |||||| |||  | |||||||| |||||||||||| ||||||| |||||| | ||||||| ||| ||||||||| ||||||   ||||||||||  |    
T  47528013 tatctgtaatggaaacgaataaattaatgttgctgctgcttcctcgcattctcgcagtcgctctttcgactgtaatggagacaagtaaaatgctcttact 47527914  T
Q  258 actgcttcct 267  Q
    | ||||||||    
T  47527913 aatgcttcct 47527904  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 128 - 261
Target Start/End: Complemental strand, 47527911 - 47527778
Alignment:
Q  128 tgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaattgatgttgctgctgtttcctcggattctcccggtcgctccttcaac 227  Q
    ||||||||| |||| |||| ||||||||||| ||||||| |||| | || |||||| ||||||||||| ||| || ||| ||| | |||||||  || ||    
T  47527911 tgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttgctgctgcttcatcagatgctctcagtcgctcaatcgac 47527812  T
Q  228 tgtaatgcagacaaagtaaatgctcttgttactg 261  Q
    || |||| |||||||| |||| |||||| |||||    
T  47527811 tgaaatggagacaaagaaaatcctcttgctactg 47527778  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 47522315 - 47522145
Alignment:
Q  58 ctgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgttgttgttgctgcttcctcggattttctcagttgctcttt 157  Q
    ||||||||| ||||||||||||| || ||||| | ||||| ||||| ||| |||||| | ||| ||   ||| |||||| |||| |||| ||  || |||    
T  47522315 ctgcttcctgggattctctcggtagctctttcgattgtaaaggagacgaataaattgatattgctg---ctgtttcctcagattctctcggtctcttttt 47522219  T
Q  158 cgactgtaaaggaggcaaataaattgatgttgctgctgtttcctcggattctcccggtcgctccttcaactgta 231  Q
    |||||| || |||| || | |||||| |||| || |||||||||||||||||| || || ||  ||||||||||    
T  47522218 cgactgcaatggagacagagaaattgttgttccttctgtttcctcggattctctcgatctctttttcaactgta 47522145  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 47527468 - 47527389
Alignment:
Q  34 gagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaatt 113  Q
    |||| |||||||||||||||||| | ||||||||||||||||| ||  ||  |||| ||||| |||||||  ||||||||    
T  47527468 gagaaaaagaaaatgctctagctccagcttcctcggattctctaggacgctttttcgactgtgatggagacaaagaaatt 47527389  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 47549782 - 47549704
Alignment:
Q  91 actgtaatggagaagaagaaattgctgttg---ttgttgctgcttcctcggattttctcagttgctctttcgactgtaa 166  Q
    ||||||||||||| |||||||||| |||||   |||||| | |||||||||||| |||| || ||| ||| ||||||||    
T  47549782 actgtaatggagatgaagaaattgttgttgttattgttgttccttcctcggattctctctgtcgcttttttgactgtaa 47549704  T

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