View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_high_44 (Length: 272)
Name: NF19776_high_44
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 30506147 - 30505890
Alignment:
| Q |
1 |
tgataatattcaacaaatgatccattagtactatttttaccattcattacctcattcccactttgacccttcatagtttttccaagaatagagtctttca |
100 |
Q |
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| T |
30506147 |
tgataatattcaacaaatgatccattagtactatttttaccattcattacctcattcccactttgacccttcatagtttttccaagaatagagtctttca |
30506048 |
T |
|
| Q |
101 |
taatcaatgaattaccaccacactgtcttggttgagtttgatagaaaactttggacacaactaacactccttctttctcttcttcatcactcccaagatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30506047 |
taatcaatgaattaccaccacactgtcttggttgagtttgatagaaaactttggacacaactaacactccttctttctcttcttcatcactcccaagatg |
30505948 |
T |
|
| Q |
201 |
atactgatgcatcacccaattagttttctctggctttctttgttttccatagtttgtg |
258 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30505947 |
atactgatgcatcacccaatttgttttctctggctttctttgttttccatagtttgtg |
30505890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 254
Target Start/End: Original strand, 34829831 - 34829974
Alignment:
| Q |
111 |
attaccaccacactgtcttggttgagtttgatagaaaactttggacacaactaacactccttctttctcttcttcatcactcccaagatgatactgatgc |
210 |
Q |
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| T |
34829831 |
attaccaccacattgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgc |
34829930 |
T |
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| Q |
211 |
atcacccaattagttttctctggctttctttgttttccatagtt |
254 |
Q |
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| T |
34829931 |
atcacccaattggtcttctcaggcttcttttgccttccatagtt |
34829974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 38887192 - 38887059
Alignment:
| Q |
114 |
accaccacactgtcttggttgagtttgatagaaaactttggacacaactaacactccttctttctcttcttcatcactcccaagatgatactgatgcatc |
213 |
Q |
| |
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||||||||| ||||| || || ||||| |||||||||||||| || || || | ||||||||||| ||||||| | |||||||| || || ||||| |
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| T |
38887192 |
accaccacattgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcattgtttccaagatggtattggtgcata |
38887093 |
T |
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| Q |
214 |
acccaattagttttctctggctttctttgttttc |
247 |
Q |
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|||||||| |||||||||||||||||||| |||| |
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| T |
38887092 |
acccaatttgttttctctggctttctttgctttc |
38887059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 4235824 - 4235779
Alignment:
| Q |
193 |
ccaagatgatactgatgcatcacccaattagttttctctggctttc |
238 |
Q |
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| T |
4235824 |
ccaagatggtattgatgcatcacccaattagtcttctctggttttc |
4235779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 254
Target Start/End: Original strand, 28948747 - 28948829
Alignment:
| Q |
172 |
tctttctcttcttcatcactcccaagatgatactgatgcatcacccaattagttttctctggctttctttgttttccatagtt |
254 |
Q |
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|||||||||||||||| ||| ||||| || || ||||||||||||||||| || ||||| ||||| |||| |||||||||| |
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| T |
28948747 |
tctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcaggcttcttttgccttccatagtt |
28948829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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