View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19776_high_51 (Length: 248)
Name: NF19776_high_51
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_high_51 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 21182006 - 21182239
Alignment:
| Q |
1 |
ttaagatccccagacacttccaataccaacctagaattgctaccgattgaaagtgtgtcatggtctcttttgagttgcaaatccactcgatttaaaacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21182006 |
ttaagatccccagacacttccaataccaacctagaattgctaccgattgaaagtgtgtcatggtctcttttgagttgcaaatccactcgatttaaaacac |
21182105 |
T |
|
| Q |
101 |
cctgaatagataaattggaattaccatcaacccataacacattagaacctttatttatggttagactcgccatgccaacatcatattggagagtatacgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21182106 |
cctgaatagataaattggaattaccatcaacccataacacattagaacctttatttatggttagactcgccatgccaacatcatattggagagtatacgg |
21182205 |
T |
|
| Q |
201 |
tccaggagcagggtcttctgcagttgtccatgat |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
21182206 |
tccaggagcagggtcttctgcagttgtccatgat |
21182239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University