View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_high_54 (Length: 239)
Name: NF19776_high_54
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_high_54 |
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| [»] scaffold0061 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 27273862 - 27274068
Alignment:
| Q |
19 |
tttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccgactatgttaaaatcgttgcagcgtcgtaatgtgggttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27273862 |
tttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccgactatgttaaaatcgttgcagcatcgtaatgtgggttt |
27273961 |
T |
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| Q |
119 |
acacacaattgtggcctgatgcggtcatggaaggatgaaggttcatttaaagaccaaaatccattgagttatcaaagaaattaagaatgcgtatgcaaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27273962 |
acacacaattgtggcctgatgcggtcatggaaggatgaaggttcatttaaagaccaaaatccattgagttatcaaagaaattaagagtgcgtatgcaaat |
27274061 |
T |
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| Q |
219 |
tttgtat |
225 |
Q |
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||||||| |
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| T |
27274062 |
tttgtat |
27274068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 768 - 974
Alignment:
| Q |
19 |
tttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccgactatgttaaaatcgttgcagcgtcgtaatgtgggttt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
768 |
tttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccaactatgttagaatcgttgcagcgtcgtaatgtgggttt |
867 |
T |
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| Q |
119 |
acacacaattgtggcctgatgcggtcatggaaggatgaaggttcatttaaagaccaaaatccattgagttatcaaagaaattaagaatgcgtatgcaaat |
218 |
Q |
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| T |
868 |
acacacaattgtggcctgatgcgttcatggaaggatgaaggttcatttaaagaccaaagtccattgagttattaacgaaattaagaatgcgtatgcaaat |
967 |
T |
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| Q |
219 |
tttgtat |
225 |
Q |
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||||||| |
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| T |
968 |
tttgtat |
974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 6279 - 6485
Alignment:
| Q |
19 |
tttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccgactatgttaaaatcgttgcagcgtcgtaatgtgggttt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
6279 |
tttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccaactatgttagaatcgttgcagcgtcgtaatgtgggttt |
6378 |
T |
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| Q |
119 |
acacacaattgtggcctgatgcggtcatggaaggatgaaggttcatttaaagaccaaaatccattgagttatcaaagaaattaagaatgcgtatgcaaat |
218 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||| |
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| T |
6379 |
acacacaattgtggcctgatgcgttcatggaaggatgaaggttcatttaaagaccaaagtccattgagttattaacgaaattaagaatgcgtatgcaaat |
6478 |
T |
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| Q |
219 |
tttgtat |
225 |
Q |
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||||||| |
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| T |
6479 |
tttgtat |
6485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 13551128 - 13551324
Alignment:
| Q |
19 |
tttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccgactatgttaaaatcgttgcagcgtcgtaatgtgggttt |
118 |
Q |
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||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||| |||| ||| ||| |
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| T |
13551128 |
tttgtatgatcactacatcggat-gctgcatcttaactcggtgtgatgtggttcttgcatcaactatgttagaatcgttgcagcgtcttaatatggtttt |
13551226 |
T |
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| Q |
119 |
acacacaattgtggcctgatgcggtcatggaaggatgaaggttcatttaaagaccaaaatccattgagttatcaaagaaattaagaatgcgtatgcaaat |
218 |
Q |
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| T |
13551227 |
acacacaattgtggcctg--------atggaaggatgaaggttcatttaaagaccaaaatccattgagttatcaaagaaattaagaatgcgtatgcaaat |
13551318 |
T |
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