View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_high_58 (Length: 230)
Name: NF19776_high_58
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_high_58 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 9222985 - 9222847
Alignment:
| Q |
13 |
gagaagaaattccagcaaaattctcgctcctctgaacgccggtgtgaatatacaacacagcgaatttcttcttccctagcttcgggaaaatcctctcctc |
112 |
Q |
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| T |
9222985 |
gagaagaaattccagcaaaattctcgctcctctgaacgccggtgtgaatatacaacacagcgaatttcttcttccctagcttcgggaaaatcctctcctc |
9222886 |
T |
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| Q |
113 |
caaaaacttcttcagaacctcaacgctaaccaatcgcgc |
151 |
Q |
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| T |
9222885 |
caaaaacttcttcagaacctcaacgctaaccaatcgcgc |
9222847 |
T |
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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 51685080 - 51685011
Alignment:
| Q |
13 |
gagaagaaattccagcaaaattctcgctcctctgaacgccggtgtgaatatacaacacagcgaatttctt |
82 |
Q |
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||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| || |||||||| |
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| T |
51685080 |
gagaagaaattccggcaaaattctcactcctctgaacaccggtgtgaatatacaacaccgcaaatttctt |
51685011 |
T |
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