View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_high_60 (Length: 227)
Name: NF19776_high_60
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_high_60 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30506424 - 30506207
Alignment:
| Q |
1 |
tacttgccaaccattttccctcctaactagagtatataggttattaacttattttgattatttttgcaatatatat---tgtaatgctggctcagtatta |
97 |
Q |
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| T |
30506424 |
tacttgccaaccattttccctcctaactagagtatataggttattaacttattttgattatttttgcaatatatatatatgtaatgctgcctcagtatta |
30506325 |
T |
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| Q |
98 |
atatataatttgttcgtatccttttcaattcggggcctcttaataattatatatccttcgatttaatcctctatatagcttgtccaccacttgaatcaag |
197 |
Q |
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||||||| ||||||| || |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
30506324 |
atatatactttgttcataaccttttcaattcttggcctcttaataattatatatcc----------tcctc--tatagcttgtccaccacttgaatcaag |
30506237 |
T |
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| Q |
198 |
gattgaaaggagcaccttgaaaatgtgaaa |
227 |
Q |
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| || ||||||||||||||||||||||||| |
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| T |
30506236 |
ggttaaaaggagcaccttgaaaatgtgaaa |
30506207 |
T |
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