View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19776_high_7 (Length: 643)
Name: NF19776_high_7
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 329 - 628
Target Start/End: Complemental strand, 35462508 - 35462208
Alignment:
| Q |
329 |
aatactcaaaat-aatatctctatcgtgaatgtgatccgatcagaaattagcattcagtcaggagcaaaattgaggtgtcccaaaaaccaacgatgaata |
427 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35462508 |
aatactcaaaatgaatatctctatcgtgaatgcgatccaatcagaaattaccattcagtcaggagcaaaattgaggtgtcccaaaaaccaacgatgaata |
35462409 |
T |
|
| Q |
428 |
aaagtcagctacgaaacacgaggtctgccttcatcttactacccgtcctctcatctcacacttaccaatgtctttacccacttgcccgcacgaatggctc |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35462408 |
aaagtcagctacgaaacacgaggtctgccttcatcttactacccgtcctctcatctcgcacttaccaatgtctttacccacttgcccgcacgaatggctc |
35462309 |
T |
|
| Q |
528 |
tgtcagtacttgcacgtgtgtctctcattcttttcannnnnnnatcttactctctatattttgtgggtccctttgaccactggcaaaatgtcatatctct |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35462308 |
tgtcagtacttgcacgtgtgtctctcattcttttcatttttttatcttactctctatattttgtgggtccctttgactactggcaaaatgtcatatctct |
35462209 |
T |
|
| Q |
628 |
g |
628 |
Q |
| |
|
| |
|
|
| T |
35462208 |
g |
35462208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 35463149 - 35462996
Alignment:
| Q |
17 |
aattaagaccttaaatctgataagaccccaacaacttttctctttaatgggatagatatcaactcttaaaaatttaagactctcctattgaaggtgtact |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35463149 |
aattgagaccttaaatctgataagacccaaacaacttttctctttaatgggatagataccaagtcttaaaaatttaagactctcccattgaaggtgtact |
35463050 |
T |
|
| Q |
117 |
aacttctatccactatttttgtgtaaaatttgtttgaatcgtgacttttaacat |
170 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35463049 |
aacttcggtccactatttttgtgtaaaatttgtttgaaacgtgacttttaacat |
35462996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University