View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_1 (Length: 718)
Name: NF19776_low_1
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 14771917 - 14771572
Alignment:
| Q |
1 |
caaggaagaataacaaagaaacagacaataacatcactcaaaaattcaaaatctaaacagtgcaaaagcatctacccagaaagaatggatgcagaaagaa |
100 |
Q |
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| T |
14771917 |
caaggaagaataacaaagaaacagacaataacatcactcaaaaattcaaaatctaaacagtgcaaaagtatctacccagaaagaatggatgcag------ |
14771824 |
T |
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| Q |
101 |
tggatgcagcctgcttttggctaagctacattctcttttaacaataaaggcnnnnnnnnacgccatctattctagagtttagcacaaatccccatagcag |
200 |
Q |
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| T |
14771823 |
---------cctgcttttggctaagctacattctcttttaacaataaaggcttttttt-acgccatctattctagagtttagcacaaacccccatagcag |
14771734 |
T |
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| Q |
201 |
tatcgtgaaaaattggattggattgctgccgattctcattatagaggaaaaaataattaagaattatgttgtgattgatgattgagattggtgagnnnnn |
300 |
Q |
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| T |
14771733 |
tatcgtgaaaaattggattggattgctgccgattctcattatagaggaaaaaataattaagaattatgttgtgattgatgattgagattggcgaggaaaa |
14771634 |
T |
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| Q |
301 |
nnncgcatgccttcgttcttgacagtaaaccatttaacacttgtgtcaacgaatcctgactt |
362 |
Q |
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| T |
14771633 |
aaacacatgccttcgttcttggcagtaaaccgtttaacacttgtgtcaacgaatcctgactt |
14771572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 457 - 709
Target Start/End: Complemental strand, 14771474 - 14771218
Alignment:
| Q |
457 |
attataatcataaacggtcttgctctcataaaaaagaacaactataaaattcacataatgaacaaataaaactgtgactccagtcaacaatattaattct |
556 |
Q |
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| T |
14771474 |
attataatcataaactgtcttgctctcataaaaaagaacaactataaaattcagataatgagcaaataaaactgtgactccagtcaacaatattaattct |
14771375 |
T |
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| Q |
557 |
tctttgtagcttttctttgatcctttctttgtgaagtagttgaaatatcttact-----tgcaatttcaacacaattgagttattagtttagtgcgtcta |
651 |
Q |
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| T |
14771374 |
tctttgtagcttttctttgaacctttctttgtgaagtagttgaaatatcttacttgacctgcaatttcaacacaattgagttattagtttagtgcgtctt |
14771275 |
T |
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| Q |
652 |
tttctctccaattaatgaatgaaacagcaacnnnnnnncaagtatcatctagcctatg |
709 |
Q |
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| T |
14771274 |
tttctctacaattaatgaatgaaacagcaac-aaaaaacaagtatcatctagcctatg |
14771218 |
T |
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