View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19776_low_10 (Length: 480)

Name: NF19776_low_10
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19776_low_10
NF19776_low_10
[»] chr8 (8 HSPs)
chr8 (19-472)||(5985430-5985885)
chr8 (149-226)||(15945033-15945110)
chr8 (147-214)||(14418925-14418992)
chr8 (147-214)||(15069104-15069171)
chr8 (147-214)||(21481033-21481100)
chr8 (149-262)||(21034245-21034358)
chr8 (189-262)||(28891181-28891254)
chr8 (163-211)||(4732088-4732136)
[»] chr6 (4 HSPs)
chr6 (19-124)||(7325155-7325259)
chr6 (163-262)||(5165534-5165633)
chr6 (149-262)||(25942046-25942159)
chr6 (149-226)||(22351581-22351658)
[»] chr3 (10 HSPs)
chr3 (20-124)||(21334600-21334703)
chr3 (149-262)||(47882579-47882692)
chr3 (147-214)||(5192111-5192178)
chr3 (147-214)||(5886661-5886728)
chr3 (147-214)||(11168562-11168629)
chr3 (147-214)||(18098900-18098967)
chr3 (149-214)||(10958053-10958118)
chr3 (147-211)||(7762681-7762745)
chr3 (147-211)||(29811283-29811347)
chr3 (147-211)||(37407103-37407167)
[»] chr2 (5 HSPs)
chr2 (18-115)||(31658106-31658201)
chr2 (149-262)||(20054451-20054564)
chr2 (149-262)||(22716924-22717037)
chr2 (147-211)||(723437-723501)
chr2 (163-211)||(19348963-19349011)
[»] chr7 (6 HSPs)
chr7 (147-214)||(20297852-20297919)
chr7 (147-214)||(28486056-28486123)
chr7 (163-262)||(44016356-44016455)
chr7 (147-214)||(44725066-44725133)
chr7 (149-214)||(6046977-6047042)
chr7 (149-262)||(25351729-25351842)
[»] chr5 (3 HSPs)
chr5 (147-214)||(20043467-20043534)
chr5 (147-214)||(6745550-6745617)
chr5 (149-262)||(10627736-10627849)
[»] chr1 (7 HSPs)
chr1 (149-262)||(9522102-9522215)
chr1 (163-211)||(28223111-28223159)
chr1 (147-214)||(27338863-27338930)
chr1 (147-214)||(31424752-31424819)
chr1 (147-214)||(51750519-51750586)
chr1 (147-214)||(51758016-51758083)
chr1 (189-262)||(2400915-2400988)
[»] chr4 (10 HSPs)
chr4 (147-211)||(12743618-12743682)
chr4 (147-211)||(26558123-26558187)
chr4 (147-214)||(11008298-11008365)
chr4 (147-214)||(18311105-18311172)
chr4 (147-214)||(18409082-18409149)
chr4 (147-214)||(47563291-47563358)
chr4 (168-214)||(18537215-18537261)
chr4 (149-262)||(4558685-4558798)
chr4 (149-214)||(11435493-11435558)
chr4 (147-211)||(52095052-52095116)
[»] scaffold1674 (1 HSPs)
scaffold1674 (147-214)||(1182-1249)
[»] scaffold0127 (1 HSPs)
scaffold0127 (147-214)||(12605-12672)
[»] scaffold1899 (1 HSPs)
scaffold1899 (149-214)||(108-173)
[»] scaffold0209 (1 HSPs)
scaffold0209 (149-262)||(16726-16839)
[»] scaffold0016 (1 HSPs)
scaffold0016 (147-211)||(115017-115081)
[»] scaffold0004 (1 HSPs)
scaffold0004 (150-214)||(80351-80415)


Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 5985885 - 5985430
Alignment:
Q  19 ttgtttacttttgttcaagactattattgcattcctttaggttttttgttgccatcgattttctccacgcatcaagtatca--gtgtgactctgtttgat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||| ||    
T  5985885 ttgtttacttttgttcaagactattattgcattcctttaggttttttgttgccatcgattttctccacgcatcaagtattatagtgtgactctgtttaat 5985786  T
Q  117 ttcacaacgactggctcccactgtgagagcaccatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5985785 ttcacaacgactggctcccactgtgagagcaccatgggtaccaagggggacattgagaagtttatcagaagcaacgattttggattatggaaggtaaata 5985686  T
Q  217 tgagggcaatacttatcccacaaatgtgtgtcgaagctttgaagggcgagtcgtttatgtcaacacatataacaccaacaaagaagaatgagatgaatga 316  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5985685 tgagggcaatactaatcccacatatgtgtgtcgaagctttgaagggcgagtcgtttatgtcaacacatataacaccaacaaagaagaatgagatgaacga 5985586  T
Q  317 taagtcaatcaatatcattatcttgtgtcttcaaggataccctagcaattatacaaatcttaatacgaacaattttcaaacattcatcacgtacttattc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5985585 taagtcaatcaatatcattatcttgtgtcttcaaggataccctagcaattatacaaatcttaatacgaacaattttcaaacattcatcacgtacttattc 5985486  T
Q  417 gccacccttgctagcaattatctactcactctattccaaaataaatgattttcttg 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5985485 gccacccttgctagcaattatctactcactctattccaaaataaatgattttcttg 5985430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 15945033 - 15945110
Alignment:
Q  149 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaat 226  Q
    ||||||| | ||| |||| ||||||||||||||| | || ||||| || ||||||||||| ||||| |||||||||||    
T  15945033 catgggttcgaagtgggatattgagaagtttatcggtagtaacgacttcgggttatggaatgtaaagatgagggcaat 15945110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 14418992 - 14418925
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  14418992 accatgggttctaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 14418925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 15069104 - 15069171
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  15069104 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 15069171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 21481033 - 21481100
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  21481033 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 21481100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 21034245 - 21034358
Alignment:
Q  149 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 248  Q
    ||||||| | ||| |||| ||||| ||||||| | | || || || |||||||| ||||||||||| ||||||||||| || || | ||||| ||||||     
T  21034245 catgggttcgaagtgggatattgaaaagtttaccggtagtaaagactttgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgtt 21034344  T
Q  249 gaagctttgaaggg 262  Q
    ||||| || |||||    
T  21034345 gaagcattaaaggg 21034358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 28891181 - 28891254
Alignment:
Q  189 aacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtcgaagctttgaaggg 262  Q
    ||||| || ||||| ||||||||||| ||||||||||| || || | ||||| |||||| ||||| ||||||||    
T  28891181 aacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgttgaagcattgaaggg 28891254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 4732088 - 4732136
Alignment:
Q  163 gggacattgagaagtttatcagaagcaacgattttgggttatggaaggt 211  Q
    |||| ||||||||||| ||| |||  |||||||||||||||||||||||    
T  4732088 gggatattgagaagttcatcggaattaacgattttgggttatggaaggt 4732136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 7325155 - 7325259
Alignment:
Q  19 ttgtttacttttgttcaagactattattgcattcctttaggttttttgttgccatcgattttctccacgcatcaagtatcagtgtgactctgtttgattt 118  Q
    |||||||||||||||||||| ||||||||||||||||| | |||||||||| ||| |||||  ||||| |||||||| |  ||||||||||||| || ||    
T  7325155 ttgtttacttttgttcaagattattattgcattccttttgtttttttgttgtcattgatttgatccacacatcaagtct-ggtgtgactctgttcgaatt 7325253  T
Q  119 cacaac 124  Q
    ||||||    
T  7325254 cacaac 7325259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 5165633 - 5165534
Alignment:
Q  163 gggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtcgaagctttgaaggg 262  Q
    |||||||||||||||||| | | || ||||| || ||||| ||||||||||| |||||||||||  | || | ||||| |||||| ||||| ||||||||    
T  5165633 gggacattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgttgaagcattgaaggg 5165534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 25942046 - 25942159
Alignment:
Q  149 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 248  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| || ||||| ||||||||||| ||||||||||| || || | ||||| ||||||     
T  25942046 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgtt 25942145  T
Q  249 gaagctttgaaggg 262  Q
    ||||| ||||||||    
T  25942146 gaagcattgaaggg 25942159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 22351658 - 22351581
Alignment:
Q  149 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaat 226  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| |||||||| ||||||||||| |||||||||||    
T  22351658 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgactttgggttttggaaggtaaagatgagggcaat 22351581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 21334703 - 21334600
Alignment:
Q  20 tgtttacttttgttcaagactattattgcattcctttaggttttttgttgccatcgattttctccacgcatcaagtatcagtgtgactctgtttgatttc 119  Q
    |||||||||||||| |||| ||||||||||||||||| || |||| |||||||| | ||| |||||  ||||||||||  | |||||||||||||| ||     
T  21334703 tgtttacttttgtttaagattattattgcattccttttgg-ttttggttgccattggtttgctccatacatcaagtattggcgtgactctgtttgaattg 21334605  T
Q  120 acaac 124  Q
    |||||    
T  21334604 acaac 21334600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 47882692 - 47882579
Alignment:
Q  149 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 248  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| || ||||| ||||||||||| ||||||||||| || || | ||||| ||||||     
T  47882692 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgtt 47882593  T
Q  249 gaagctttgaaggg 262  Q
    ||||| ||||||||    
T  47882592 gaagcattgaaggg 47882579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 5192111 - 5192178
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  5192111 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 5192178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 5886661 - 5886728
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | | |  ||||||||||||||||||||||||||    
T  5886661 accatgggttcaaagtgggatattgagaagtttaccggtaataacgattttgggttatggaaggtaaa 5886728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 11168562 - 11168629
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  11168562 accatgggttcaaagtgggatattgagaagtttaccggagctaacgattttgggttatggaaggtaaa 11168629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 18098967 - 18098900
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  18098967 accatgggttcgaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 18098900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 10958118 - 10958053
Alignment:
Q  149 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  10958118 catgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 10958053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 7762681 - 7762745
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggt 211  Q
    ||||||||| | ||| |||| ||||||||||| | | |||  |||||||||||||||||||||||    
T  7762681 accatgggttcaaagtgggatattgagaagttcaccggaattaacgattttgggttatggaaggt 7762745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 29811283 - 29811347
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggt 211  Q
    ||||||||| | ||| |||| ||||||||||| | | |||| || ||||||||||||||||||||    
T  29811283 accatgggttcaaagtgggatattgagaagttcaccggaagtaatgattttgggttatggaaggt 29811347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 37407103 - 37407167
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggt 211  Q
    ||||||||| | ||| |||| ||||||||||||| | |||  ||||||||| |||||||||||||    
T  37407103 accatgggttcaaagtgggatattgagaagtttaccggaattaacgattttaggttatggaaggt 37407167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 31658201 - 31658106
Alignment:
Q  18 attgtttacttttgttcaagactattattgcattcctttaggttttttgttgccatcgattttctccacgcatcaagtatcagtgtgactctgtttga 115  Q
    |||||||| |||||||||||| ||||||||||||  ||| |  ||||||||| ||| ||||| |||||| ||||| ||||| |||| |||||||||||    
T  31658201 attgtttaattttgttcaagattattattgcatttttttgg--tttttgttgtcattgatttgctccacacatcatgtatcggtgtaactctgtttga 31658106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 20054564 - 20054451
Alignment:
Q  149 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 248  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| || ||||| ||||||||||| ||||||||||| || || | ||||| ||||||     
T  20054564 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgtt 20054465  T
Q  249 gaagctttgaaggg 262  Q
    ||||| ||||||||    
T  20054464 gaagcattgaaggg 20054451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 22717037 - 22716924
Alignment:
Q  149 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 248  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| || ||||| ||||||||||| |||||||||||  | || | ||||| ||||||     
T  22717037 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgtt 22716938  T
Q  249 gaagctttgaaggg 262  Q
    ||||| ||||||||    
T  22716937 gaagcattgaaggg 22716924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 723501 - 723437
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggt 211  Q
    ||||||||| | ||| || | ||||||||||| | | |||| |||||||||||||||||||||||    
T  723501 accatgggttcaaagtggaatattgagaagttcaccggaagtaacgattttgggttatggaaggt 723437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 19349011 - 19348963
Alignment:
Q  163 gggacattgagaagtttatcagaagcaacgattttgggttatggaaggt 211  Q
    ||||||| |||||||| | | ||||||| ||||||||||||||||||||    
T  19349011 gggacatcgagaagttcaccggaagcaatgattttgggttatggaaggt 19348963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 20297852 - 20297919
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| ||||   ||||||||||||||||||||||||||    
T  20297852 accatgggttcaaagtgggatattgagaagtttaccagagataacgattttgggttatggaaggtaaa 20297919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 28486056 - 28486123
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  28486056 accatgggttcgaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 28486123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 44016455 - 44016356
Alignment:
Q  163 gggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtcgaagctttgaaggg 262  Q
    |||| ||||| ||||||| ||| || ||||| ||  |||| ||||||||||| ||||||||||| || || | ||||| |||||| ||||| ||||||||    
T  44016455 gggatattgaaaagtttaccagtagtaacgacttctggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgttgaagcattgaaggg 44016356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 44725066 - 44725133
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  44725066 accatgggttcgaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 44725133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 6046977 - 6047042
Alignment:
Q  149 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||| | ||| |||| |||||||| |||||||||   || |||||||||||||||||||||||    
T  6046977 catgggtccaaagtgggatattgagaattttatcagagataatgattttgggttatggaaggtaaa 6047042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 25351729 - 25351842
Alignment:
Q  149 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 248  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| || ||||| ||||||||||| |||||||||||  | || | ||||| ||||||     
T  25351729 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgtt 25351828  T
Q  249 gaagctttgaaggg 262  Q
    ||||| ||||||||    
T  25351829 gaagcattgaaggg 25351842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 20043467 - 20043534
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||||| ||   ||||||||||||||||||||||||||    
T  20043467 accatgggttcgaagtgggatattgagaagtttatcggagataacgattttgggttatggaaggtaaa 20043534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 6745550 - 6745617
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  6745550 accatgggttcaaagagggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 6745617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 10627736 - 10627849
Alignment:
Q  149 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 248  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| || ||||| |||||||||||||| |||||||| || || | ||||| ||||||     
T  10627736 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaatataagggcaattctaattcaacaaaagtgtgtt 10627835  T
Q  249 gaagctttgaaggg 262  Q
    ||| | ||||||||    
T  10627836 gaaacattgaaggg 10627849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 9522102 - 9522215
Alignment:
Q  149 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 248  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| || ||||| ||||||||||| ||||||||||| || || | ||||| ||||||     
T  9522102 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgtt 9522201  T
Q  249 gaagctttgaaggg 262  Q
    ||||| ||||||||    
T  9522202 gaagcattgaaggg 9522215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 28223159 - 28223111
Alignment:
Q  163 gggacattgagaagtttatcagaagcaacgattttgggttatggaaggt 211  Q
    |||| ||||||||||||| | |||| |||||||||||||||||||||||    
T  28223159 gggatattgagaagtttaccggaagtaacgattttgggttatggaaggt 28223111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 27338930 - 27338863
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  27338930 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 27338863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 31424819 - 31424752
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  31424819 accatgggttcgaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 31424752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 51750519 - 51750586
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  51750519 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 51750586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 51758016 - 51758083
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| ||||   ||||||||||||||||||||| ||||    
T  51758016 accatgggttcaaagtgggatattgagaagtttaccagagataacgattttgggttatggaagataaa 51758083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 2400988 - 2400915
Alignment:
Q  189 aacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtcgaagctttgaaggg 262  Q
    ||||| || ||||| ||||||||||| ||||||||||| || || | ||||| |||||| ||||| ||||||||    
T  2400988 aacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgttgaagcattgaaggg 2400915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 12743682 - 12743618
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggt 211  Q
    ||||||||| | ||| |||| ||||||||||||| | |||  |||||||||||||||||||||||    
T  12743682 accatgggttcaaagtgggatattgagaagtttaccggaattaacgattttgggttatggaaggt 12743618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 26558123 - 26558187
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggt 211  Q
    ||||||||| | ||| |||| || |||||||| | |||||| |||||||||||||||||||||||    
T  26558123 accatgggttcaaagtgggatatcgagaagttcaccagaagtaacgattttgggttatggaaggt 26558187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 11008365 - 11008298
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  11008365 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 11008298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 18311172 - 18311105
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  18311172 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 18311105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 18409149 - 18409082
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  18409149 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 18409082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 47563291 - 47563358
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| | || ||||||||||||| | || | ||||||||||||||||||||||||||    
T  47563291 accatgggttcgaagtgagatattgagaagtttaccggaggtaacgattttgggttatggaaggtaaa 47563358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 18537261 - 18537215
Alignment:
Q  168 attgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||||||| | || | ||||||||||||||||||||||||||    
T  18537261 attgagaagtttaccggaggtaacgattttgggttatggaaggtaaa 18537215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 4558685 - 4558798
Alignment:
Q  149 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 248  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| ||  |||| ||||||||||| ||||||||||| || || | ||||| ||||||     
T  4558685 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcaggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgtt 4558784  T
Q  249 gaagctttgaaggg 262  Q
    ||||| ||||||||    
T  4558785 gaagcattgaaggg 4558798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 11435493 - 11435558
Alignment:
Q  149 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||| | ||| |||| |||||||||||||   || | ||||||||||||||||||||||||||    
T  11435493 catgggttcaaagtgggatattgagaagtttactggaggtaacgattttgggttatggaaggtaaa 11435558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 52095116 - 52095052
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggt 211  Q
    ||||||||| | ||| |||| ||||||||||| | | |||  |||||||||||||||||||||||    
T  52095116 accatgggttcaaagtgggatattgagaagttcaccggaattaacgattttgggttatggaaggt 52095052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 1249 - 1182
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  1249 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 1182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 12672 - 12605
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  12672 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 12605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1899 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1899
Description:

Target: scaffold1899; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 108 - 173
Alignment:
Q  149 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    ||||||| | ||| |||| |||||||||||||   || | ||||||||||||||||||||||||||    
T  108 catgggttcaaagtgggatattgagaagtttactggaggtaacgattttgggttatggaaggtaaa 173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 16839 - 16726
Alignment:
Q  149 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 248  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| || ||||| ||||||||||| |||||||||||  | || | ||||| ||||||     
T  16839 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgtt 16740  T
Q  249 gaagctttgaaggg 262  Q
    ||||| ||||||||    
T  16739 gaagcattgaaggg 16726  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 115017 - 115081
Alignment:
Q  147 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggt 211  Q
    ||||||||| | ||| |||| ||||||||||| | | |||  |||||||||||||||||||||||    
T  115017 accatgggttcaaagtgggatattgagaagttcaccggaattaacgattttgggttatggaaggt 115081  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 80351 - 80415
Alignment:
Q  150 atgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 214  Q
    |||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  80351 atgggttcgaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 80415  T

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