View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_13 (Length: 452)
Name: NF19776_low_13
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 212 - 447
Target Start/End: Complemental strand, 42518545 - 42518310
Alignment:
| Q |
212 |
tcaagcaggtacacgtactttactttctcgctcacaagnnnnnnnnnnnnnnnnnntctagtagacactgatggtttttatacagcagctttaagctttt |
311 |
Q |
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| T |
42518545 |
tcaagcaggtacacgtactttactttctcgctcacaagacacacacacacacactctctagtagacactgatggtttttatacagcagctttaagctttt |
42518446 |
T |
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| Q |
312 |
ccactgtctctctctatgtctgaagtaaattcacaacgtgaagattcacgaagacagaacagaaacaacttttttagcagttaaattattaccacgttat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518445 |
ccactgtctctctctatgtctgaagtaaattcacaacgtgaagattcacgaagacagaacagaaacaacttttttagcagttaaattattaccacgttat |
42518346 |
T |
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| Q |
412 |
ttgttatggacactttatttatttgcctttgctact |
447 |
Q |
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||||||||||||||||||||||||| ||||| |||| |
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| T |
42518345 |
ttgttatggacactttatttatttgtctttgatact |
42518310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 42518635 - 42518603
Alignment:
| Q |
122 |
ccatagcatgaacgacacttgtgctttttgttt |
154 |
Q |
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| T |
42518635 |
ccatagcatgaacgacacttgtgctttttgttt |
42518603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 42518737 - 42518708
Alignment:
| Q |
20 |
aaaatttcagctatgcatgcatagtttaac |
49 |
Q |
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| T |
42518737 |
aaaatttcagctatgcatgcatagtttaac |
42518708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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