View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_15 (Length: 436)
Name: NF19776_low_15
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 2808227 - 2808633
Alignment:
| Q |
17 |
cattaattgtgtatggtggttagggtgggtttgaaagggaaatggcatgcagttggaatactctgtattcgcatactcagtagtcggtacattggtggct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2808227 |
cattaattgtgtatggtggttagggtgggtttgaaagggaaatggcatgcagttggaatactctgtattcgcatactcagtagtcggtacattggtggct |
2808326 |
T |
|
| Q |
117 |
gtttggtcaagttcggacaatctagaaaatacgctgatttttatttttatttcaaatctaaaatactaagtttaaatatgaattgtttaatcttgattca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2808327 |
gtttggtcaagttcggacaatctagaaaatacgctgatttttatttttatttcaaatctaaaatactaagtttaaatatgaattgtttaatcttgattca |
2808426 |
T |
|
| Q |
217 |
acggccattgatgtgttgactctatgaaggaacaatattctgaccgcacgcaatcgagatccgtttgaaaggtatgaactgtgcatcttgtgctcgtatg |
316 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2808427 |
acggtcattgatgtgttgactctatgaaggcacaatattctgaccgcacgcaatcgagatccgtttgaaaggtatgaactgtgcatcttgtgctcgtatg |
2808526 |
T |
|
| Q |
317 |
gggcatgtacctacccaactgacatagcaagtcatatagaatattaaattaagatgttgtcagttgcatgtcagtctcatatgtatctagtttgctctag |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2808527 |
gggcatgtacctacccaactgacatagcaagtcatatagaatattaaattaagatgttgtcagttacatgtcagtctcatatgtatctagtttgctctag |
2808626 |
T |
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| Q |
417 |
gtgcttc |
423 |
Q |
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||||||| |
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| T |
2808627 |
gtgcttc |
2808633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 4272135 - 4272447
Alignment:
| Q |
17 |
cattaattgtgtatggtggttagggtgggtttgaaagggaaatggcatgcagttggaatactctgtattcgcatactcagtagtcggtacattggtggct |
116 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
4272135 |
cattaattgtgtatggtggttaaggtgggtttgaaagggaaatggcatgcagttggaatactatgtattcgcatactcagtattcggtacattggtggct |
4272234 |
T |
|
| Q |
117 |
gtttggtcaagttcggacaatctagaaaatacgctgatttttatttttatttcaaatctaaaatactaagtttaaatatgaattgtttaatcttgattca |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4272235 |
gtttggtcaagttcggacaatctagaaaatatgctgatttttatttttatttcaaatctaaaataccaagtttaaatatgaattgtttaatcttgattca |
4272334 |
T |
|
| Q |
217 |
acggccattgatgtgttgactctatgaaggaacaatattctgaccgcacgcaatcgagatccgtttgaaaggtatgaactgtgcatcttgtgctcgtatg |
316 |
Q |
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| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4272335 |
atggtcattgatgtgttgactctatgaaggcacaatattctgaccgcacgcaatcgagatccgtttgaaaggtatgaactgtgcatcttgtgctcgtatg |
4272434 |
T |
|
| Q |
317 |
gggcatgtaccta |
329 |
Q |
| |
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||||||||||||| |
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|
| T |
4272435 |
gggcatgtaccta |
4272447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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