View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_16 (Length: 425)
Name: NF19776_low_16
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 188 - 424
Target Start/End: Original strand, 8561941 - 8562178
Alignment:
| Q |
188 |
gtttcttcttgttgcacccttccatttactttagtgtactgtctctcctcaattagttcacactcatagaaacgaaacatacaaaattgcaggaagaaag |
287 |
Q |
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| T |
8561941 |
gtttcttcttgttgcaccctttaatttactttagtgtattgtctctcctcaattagttcacattcacagaaacgaaacatacaaaattgcaggaagaaag |
8562040 |
T |
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| Q |
288 |
taaccataatatctg-cataaaacagcatcataaaaattcatctttcattttgctccaaacagttccaacaaccatattcaagttctaaggtaaaacctc |
386 |
Q |
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| T |
8562041 |
taaccataagatctggcataaaacagcagcataaaaattcatctttcattttgctccaaacaattccaacaaccatattcaagatctaaggtaaattctc |
8562140 |
T |
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| Q |
387 |
tatttttagcaaaaacaaacaacaattttttcttcatc |
424 |
Q |
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| T |
8562141 |
tatttttaacaaaaacaaacaacaattttttcttcatc |
8562178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 8561812 - 8561893
Alignment:
| Q |
54 |
ggtgatgtttagcctggaaacgaggagttatttcccatcgtgggaaagcaccctttctcaggacagctggtattatgcaacc |
135 |
Q |
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| T |
8561812 |
ggtgacgtttagcctggaaatcaggagttgtttcccaccatgggaaagctccctttctcaggacagctggcattatgcaacc |
8561893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 420
Target Start/End: Original strand, 14391386 - 14391483
Alignment:
| Q |
322 |
aattcatctttcattttgctccaaacagttccaacaaccatattcaagttctaaggtaaaacctctatttttagcaaaaacaaacaacaattttttctt |
420 |
Q |
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| T |
14391386 |
aattcatcatccatttttctcaaaacaattccaacaac-atattcaagattttaagtaaatcctctattttcaacagcaacaaacaacaatttcttctt |
14391483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 207 - 424
Target Start/End: Complemental strand, 5851278 - 5851061
Alignment:
| Q |
207 |
ttccatttactttagtgtactgtctctcctcaattagttcacactcatagaaacgaaacatacaaaattgcaggaagaaagtaaccataatatctgcata |
306 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
5851278 |
ttccgtttactttagtgtattgtctctcctcaattagttcacactcacagaaacgaaacatacaaaattgcaggaagaaagtaactataagatctgcata |
5851179 |
T |
|
| Q |
307 |
aaacagcatcataaaaattcatctttcattttgctccaaacagttccaacaaccatattcaagttctaaggtaaaacctctatttttagcaaaaacaaac |
406 |
Q |
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| T |
5851178 |
aaacagcagcataaaaattcatctttcattttgctccaaacaattccaacaaccatatccaaaatctaaggtaaatcctctatttttaacaaaaacaaac |
5851079 |
T |
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| Q |
407 |
aacaattttttcttcatc |
424 |
Q |
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| T |
5851078 |
aacaattttttcttcatc |
5851061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 5851412 - 5851345
Alignment:
| Q |
75 |
gaggagttatttcccatcgtgggaaagcaccctttctcaggacagctggtattatgcaacctattgct |
142 |
Q |
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| T |
5851412 |
gaggagttgtttcccaccatggaaaagctccctttctcaggaccgctggcattatgcaacctgttgct |
5851345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 219
Target Start/End: Complemental strand, 5851308 - 5851277
Alignment:
| Q |
188 |
gtttcttcttgttgcacccttccatttacttt |
219 |
Q |
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| T |
5851308 |
gtttcttcttgttgcacccttccatttacttt |
5851277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 383 - 424
Target Start/End: Complemental strand, 49333977 - 49333936
Alignment:
| Q |
383 |
cctctatttttagcaaaaacaaacaacaattttttcttcatc |
424 |
Q |
| |
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| T |
49333977 |
cctctattttcaacaaaaacaaacaaccattttttcttcatc |
49333936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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