View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_17 (Length: 417)
Name: NF19776_low_17
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 45971715 - 45971313
Alignment:
| Q |
1 |
agagatagagataaacatataagatgtcacatacggtatttgtattttgatgttcaaataacataattcaaagttaatcatgtttgtcatattgtgtgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45971715 |
agagatagagataaacatataagatgtcacatacggtatttgtattttgatgttcaaataacataattcaaagttaatcatgtttgtcatattgtgtgag |
45971616 |
T |
|
| Q |
101 |
tctatattatcaaataaatgtatgaacttattcagttgtttcaaatgcatccctcacattagaaacttgatgtcattatagtcttgtaaatatcaacgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45971615 |
tctatattatcaaataaatgtatgaacttattcagttgtttcaaatgcatccctcacattagaaacttaatgtcattatagtcttgtaaatatcaacgga |
45971516 |
T |
|
| Q |
201 |
gggacgaatttattgatattattcaatttcaaatatcagtaatatggaggattgtgttgattcaaaattgcaacttcaggaagaaattgagtatttattc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45971515 |
aggacgaatttattgatattattcaatttcaaatatcagtaatatggaggattgtgttgattaaaaattgcaacttcaggaagaaattgagtatttattc |
45971416 |
T |
|
| Q |
301 |
aataaaaccaggagtgggaatagccctttcctttgactcctccttagtccttactctatgaagaagtattctatatgtgcttgttggttatctcatacct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45971415 |
aataaaaccaggagtgggaatagccctttcctttgactcctccttagtccttactctatgaagaagtattctatatgtgcttgttggttatctcatacct |
45971316 |
T |
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| Q |
401 |
gtg |
403 |
Q |
| |
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||| |
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| T |
45971315 |
gtg |
45971313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 393358 - 393389
Alignment:
| Q |
37 |
tatttgtattttgatgttcaaataacataatt |
68 |
Q |
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| T |
393358 |
tatttgtattttgatgttcaaataacataatt |
393389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 35620789 - 35620848
Alignment:
| Q |
3 |
agatagagataaacatataagatgtcacatacggtatttgtattttgatgttcaaataac |
62 |
Q |
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|||||||||||| |||||| | ||||||||| |||| ||||||||||||||||||||||| |
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| T |
35620789 |
agatagagataagcatatacggtgtcacatatggtagttgtattttgatgttcaaataac |
35620848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 17753766 - 17753704
Alignment:
| Q |
1 |
agagatagagataaacatataagatgtcacatacggtatttgtattttgatgttcaaataaca |
63 |
Q |
| |
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||||||||||||| ||||||| | |||||||||||| | ||| ||||||||||||||||||| |
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| T |
17753766 |
agagatagagatagacatatatggtgtcacatacggcgtatgttttttgatgttcaaataaca |
17753704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 45952811 - 45952773
Alignment:
| Q |
25 |
tgtcacatacggtatttgtattttgatgttcaaataaca |
63 |
Q |
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||||||||| | ||||||||||||||||||||||||||| |
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| T |
45952811 |
tgtcacatatgatatttgtattttgatgttcaaataaca |
45952773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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