View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_19 (Length: 408)
Name: NF19776_low_19
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 27812479 - 27812604
Alignment:
| Q |
16 |
ttttcatctctatatatttaagcggaaaactagtcttcactaattagtctttcatctatctgtgtctaagtgtgatagagagaaaatacatttgtctggg |
115 |
Q |
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| T |
27812479 |
ttttcatctctatatatttaagcggaaaattagtcttcactaattagtctttcgtctatctgtgtctaagtgtgatagagagaaaatacatttgtctagg |
27812578 |
T |
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| Q |
116 |
tatgtcttgagggaataaattgaaca |
141 |
Q |
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| T |
27812579 |
tatgtcttgagggaataaattgaaca |
27812604 |
T |
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Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 193 - 288
Target Start/End: Original strand, 27812656 - 27812751
Alignment:
| Q |
193 |
cttagatctaatatttgtactagatgtattattgtcggacctcatatcacatggttgtctaattttgttctttcaaaatgttatcaacgtagttga |
288 |
Q |
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| T |
27812656 |
cttagatctaatatttgtactagatgtattattgttggacctcatatcacatggttgtctaattttgttctttgaaaatgttatcaacgtagttga |
27812751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 329 - 397
Target Start/End: Original strand, 27812792 - 27812860
Alignment:
| Q |
329 |
ctttataaagaacatttatatcgactgtgttcaaatataattgatctattgtttgatatttaatatatt |
397 |
Q |
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| T |
27812792 |
ctttataaagtacatttatatcgactgtgttcaaatataattgatctattgtttgatatttaatatatt |
27812860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 27804516 - 27804595
Alignment:
| Q |
193 |
cttagatctaatatttgtactagatgtattattgtcggacctcatatcacatggttgtctaattttgttctttcaaaatgtt |
274 |
Q |
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| T |
27804516 |
cttagatcaaatatttgtattagaggtattattgtccgacctcatt--agaaggttgtctaattttgcacttccaaaatgtt |
27804595 |
T |
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