View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_2 (Length: 715)
Name: NF19776_low_2
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 27 - 715
Target Start/End: Complemental strand, 21215857 - 21215171
Alignment:
| Q |
27 |
ctattcatgtgtgtgtaaaaatatacatatatagtaagtaattcatgaactatgtatgaacaaataaaaggatacctgatcacgaaggttatcggttttg |
126 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| || |||||| |
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| T |
21215857 |
ctattcatgtgtgtgtaaaagtatacatatatagtaagtaattcatgaactgtgtatgaaaaaataaaagga--cctgatcacgaaggttgtcagttttg |
21215760 |
T |
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| Q |
127 |
tccatcaaaacatcaatcttcacttgacgattaaggacctgcatacaaaacaaataaaattttctctcttaatctaacgatctgcggttcaaagtcggct |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21215759 |
tccatcaaaacatcaatcttcacttgacgattaaggacctgcatacaaaacaaataaaattttctctcttaatctaacgatctgcgattcaaagtcggct |
21215660 |
T |
|
| Q |
227 |
ccagaggatccaatttagacatatacatacctgatcaatattttccaacataacatcttgaacttgagaaacctgagcttttactttcgcaagtttgcta |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21215659 |
ccagaggatccaatttagacatatacatacctgatcaatattttccaacataacatcttgaacttgagaaacctgagcttttactttcgcaagtttgcta |
21215560 |
T |
|
| Q |
327 |
acctcttctggatgttccacacaatattccatatgctccttcaatttcggtctaaaccatgcatatatacaacaaaaatttcttgttaattaatgcaatt |
426 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21215559 |
acctcttctggatgttccacacaatattgcatatgctccttcaatttcggtctaaaccatgcatatatacaacaaaaatttcttgttaattaatgcaatt |
21215460 |
T |
|
| Q |
427 |
caaattttgagacacattttctatacacaaaattgttataaacttgagtacccaaattctttattcaagcttttagatgttgccgttgcagcttttcctc |
526 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21215459 |
caacttttgagacacattttctatacacaaaattgttataaacttgagtacccaaattctttattcaagcttttagatgttgctgttgcagcttttcctc |
21215360 |
T |
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| Q |
527 |
caccatatcttttggtaaaatcctccttgatgcgatcaagaaaggccatagcaatatggcgatcaaaagactccacagcaacaacgcagtaagctaaaga |
626 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21215359 |
caccatatcttttggtaaaatcctccttgatgcgatcaagaaatgccatagcaatatggcgatcaaaagactccacaccaacaacgcagtaagctaaaga |
21215260 |
T |
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| Q |
627 |
taatagatcatgtaagtctattaatatattagaattttagaaagaaaaagaatgcaaatcataaatttcccaagaggtgttcgatgttt |
715 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||| |||||||||| ||||||||||||||||| | ||||||||| |||||| |
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| T |
21215259 |
taatagatcatgtaagtctaataatatagtagaattttagatagaaaaagaaagcaaatcataaatttcctacgaggtgttcaatgttt |
21215171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 264 - 382
Target Start/End: Original strand, 7535848 - 7535966
Alignment:
| Q |
264 |
atattttccaacataacatcttgaacttgagaaacctgagcttttactttcgcaagtttgctaacctcttctggatgttccacacaatattccatatgct |
363 |
Q |
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|||||||||| |||||| ||| |||| |||||| |||||||| ||||| ||||||||||||||||| || ||||||||||||||||||| ||| |||| |
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| T |
7535848 |
atattttccatcataactcctttgacttcagaaacttgagctttcactttagcaagtttgctaacctcctccggatgttccacacaatattgcatttgct |
7535947 |
T |
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| Q |
364 |
ccttcaatttcggtctaaa |
382 |
Q |
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||||||| || |||||||| |
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| T |
7535948 |
ccttcaactttggtctaaa |
7535966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 473 - 621
Target Start/End: Original strand, 7536042 - 7536190
Alignment:
| Q |
473 |
agtacccaaattctttattcaagcttttagatgttgccgttgcagcttttcctccaccatatcttttggtaaaatcctccttgatgcgatcaagaaaggc |
572 |
Q |
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|||||||||||||||| || | ||||||| ||||| |||| |||| ||||||||||||||||||| ||||||| ||||| || || |||||||| || |
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| T |
7536042 |
agtacccaaattctttgttaagacttttagcagttgctgttgtagctcttcctccaccatatcttttattaaaatcatccttaatacgttcaagaaaagc |
7536141 |
T |
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| Q |
573 |
catagcaatatggcgatcaaaagactccacagcaacaacgcagtaagct |
621 |
Q |
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|| | ||| || | | ||| ||||||||| |||||||| ||||||||| |
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| T |
7536142 |
tattggaatttgtctaccaacagactccactgcaacaacacagtaagct |
7536190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 264 - 382
Target Start/End: Original strand, 7489766 - 7489884
Alignment:
| Q |
264 |
atattttccaacataacatcttgaacttgagaaacctgagcttttactttcgcaagtttgctaacctcttctggatgttccacacaatattccatatgct |
363 |
Q |
| |
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|||||||||| |||||| ||| |||| |||||| || ||||| ||||| |||||||| |||||||| || ||||||||||||||||| | || |||| |
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| T |
7489766 |
atattttccatcataactcctttgacttcagaaacttgtgctttcactttagcaagttttctaacctcctccggatgttccacacaatactgtatctgct |
7489865 |
T |
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| Q |
364 |
ccttcaatttcggtctaaa |
382 |
Q |
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||||||| || |||||||| |
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| T |
7489866 |
ccttcaactttggtctaaa |
7489884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 473 - 621
Target Start/End: Original strand, 7489948 - 7490096
Alignment:
| Q |
473 |
agtacccaaattctttattcaagcttttagatgttgccgttgcagcttttcctccaccatatcttttggtaaaatcctccttgatgcgatcaagaaaggc |
572 |
Q |
| |
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|||||||||||||||| || | ||||||| ||||| |||| |||| |||||||||||||| |||| ||||||| || || || || |||||||| || |
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| T |
7489948 |
agtacccaaattctttgttaagacttttagcagttgctgttgtagctcttcctccaccatattttttattaaaatcatctttaatacgttcaagaaaagc |
7490047 |
T |
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| Q |
573 |
catagcaatatggcgatcaaaagactccacagcaacaacgcagtaagct |
621 |
Q |
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|| | ||| || | | ||| ||||||||| |||||||| ||||||||| |
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| T |
7490048 |
tattggaatttgtctaccaacagactccactgcaacaacacagtaagct |
7490096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 10692678 - 10692569
Alignment:
| Q |
261 |
tcaatattttccaacataacatcttgaacttgagaaacctgagcttttactttcgcaagtttgctaacctcttctggatgttccacacaatattccatat |
360 |
Q |
| |
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|||||||| |||| ||| ||| ||| ||||| ||||||||||||||| || || ||||| ||||| | ||| || ||||| || ||||| || | ||||| |
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| T |
10692678 |
tcaatattctccatcatgacacctttaacttcagaaacctgagctttcacctttgcaagcttgcttatctcgtcaggatgatcaacacagtactgcatat |
10692579 |
T |
|
| Q |
361 |
gctccttcaa |
370 |
Q |
| |
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| |||||||| |
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| T |
10692578 |
gttccttcaa |
10692569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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