View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_21 (Length: 394)
Name: NF19776_low_21
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 379
Target Start/End: Original strand, 9166212 - 9166593
Alignment:
| Q |
10 |
catcatcatcatcaaggtcccctccccttggaccttcatcgtcatcatagccacnnnnnnnattcagtccatgtctgttcttcttatctacttcctcatc |
109 |
Q |
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| T |
9166212 |
catcatcatcatcaaggtcccctccccttggaccttcatcgtcatcatagccactttttttattcagtccatgtctattcttcttatctacttcctcatc |
9166311 |
T |
|
| Q |
110 |
ttcatcttcctctcctttatcagaggaagga------------tcatcaccagnnnnnnnacggcttctcccaccacctgcgttgctttctttgtcatct |
197 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9166312 |
ttcatcttcctctcctttatcagaggaaggaccttcatcatcatcatcaccagtttttttacggcttctcccaccacctgcgttgctttctttgtcatct |
9166411 |
T |
|
| Q |
198 |
aacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatcagcagtctttttcctattattcatcttct |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9166412 |
aacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatcagcagtctttttcctattattcatcttct |
9166511 |
T |
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| Q |
298 |
cttctgcttcctccaaagttaactgcttatactgcgcaactttgttaaagttgtacctaaataacagcatgcggaactttgt |
379 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9166512 |
cttctgcttcctccaaagttaattgcttatactgcgcaactttgttaaagttgtacctaaataacagcatgcggaactttgt |
9166593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 82 - 378
Target Start/End: Original strand, 9154867 - 9155175
Alignment:
| Q |
82 |
gtctgttcttcttatctacttcctcatcttcatcttcctctcctttatcagaggaagga------------tcatcaccagnnnnnnnacggcttctccc |
169 |
Q |
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|||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| |
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| T |
9154867 |
gtcttttcttcctatctacttcctcgtcttcatcttcctctcctttatcagaggaaggaccttcatcttcatcatcaccagtctttttacggcctctccc |
9154966 |
T |
|
| Q |
170 |
accacctgcgttgctttctttgtcatctaacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatca |
269 |
Q |
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||| ||||||||||| || |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9154967 |
accccctgcgttgctctccttgtcatctaacttcccatgttcaccaaatgcagcaggcccattgtttgctgctttcatcatccatctttgatatccatca |
9155066 |
T |
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| Q |
270 |
gcagtctttttcctattattcatcttctcttctgcttcctccaaagttaactgcttatactgcgcaactttgttaaagttgtacctaaataacagcatgc |
369 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||| ||||| || |||||||| || ||||| |||||||||||||||||| | || ||||||| |
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| T |
9155067 |
gcagtttttttcctatttttcatcttctcttctgcttcctctaaagtcaattgcttatattgtgcaaccttgttaaagttgtacctacaaaaaagcatgc |
9155166 |
T |
|
| Q |
370 |
ggaactttg |
378 |
Q |
| |
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||||||| |
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| T |
9155167 |
caaactttg |
9155175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 9154799 - 9154845
Alignment:
| Q |
11 |
atcatcatcatcaaggtcccctccccttggaccttcatcgtcatcat |
57 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||| || ||||||| |
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| T |
9154799 |
atcatcctcatcatggtcccctccccttggaccttcttcatcatcat |
9154845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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