View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19776_low_22 (Length: 391)

Name: NF19776_low_22
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19776_low_22
NF19776_low_22
[»] chr5 (12 HSPs)
chr5 (15-228)||(40845784-40845997)
chr5 (233-391)||(40842367-40842525)
chr5 (233-391)||(31474807-31474965)
chr5 (149-225)||(41144669-41144745)
chr5 (144-195)||(10523682-10523733)
chr5 (144-227)||(14547818-14547901)
chr5 (150-212)||(967573-967635)
chr5 (150-224)||(8222112-8222186)
chr5 (159-195)||(554386-554422)
chr5 (169-225)||(7738557-7738613)
chr5 (153-224)||(29557470-29557541)
chr5 (156-226)||(2352175-2352245)
[»] chr3 (17 HSPs)
chr3 (146-222)||(25102066-25102141)
chr3 (149-227)||(47850012-47850090)
chr3 (149-229)||(25134175-25134255)
chr3 (149-229)||(47006589-47006669)
chr3 (159-226)||(35306617-35306684)
chr3 (146-224)||(42891016-42891094)
chr3 (146-225)||(26040814-26040894)
chr3 (144-227)||(18029983-18030066)
chr3 (151-228)||(39430254-39430331)
chr3 (151-195)||(4539883-4539927)
chr3 (151-227)||(47069307-47069383)
chr3 (169-228)||(52859627-52859686)
chr3 (159-225)||(19961131-19961197)
chr3 (156-214)||(25096290-25096348)
chr3 (149-195)||(37919185-37919231)
chr3 (159-228)||(27117959-27118028)
chr3 (149-225)||(48192655-48192731)
[»] chr2 (13 HSPs)
chr2 (149-229)||(20061143-20061223)
chr2 (149-219)||(32294598-32294668)
chr2 (151-225)||(44068872-44068946)
chr2 (149-229)||(14275749-14275828)
chr2 (148-227)||(3348291-3348370)
chr2 (151-227)||(409893-409970)
chr2 (146-195)||(2290287-2290336)
chr2 (151-229)||(30549050-30549130)
chr2 (169-229)||(39420301-39420361)
chr2 (149-228)||(25626337-25626416)
chr2 (144-227)||(37230556-37230639)
chr2 (153-211)||(7061535-7061593)
chr2 (146-195)||(7743810-7743859)
[»] chr7 (5 HSPs)
chr7 (149-227)||(32786785-32786863)
chr7 (151-211)||(28337215-28337275)
chr7 (153-222)||(7458003-7458072)
chr7 (146-195)||(34964045-34964094)
chr7 (171-227)||(45837803-45837859)
[»] chr4 (15 HSPs)
chr4 (169-230)||(20537411-20537472)
chr4 (149-226)||(27918424-27918501)
chr4 (149-227)||(1961605-1961683)
chr4 (149-227)||(22019384-22019462)
chr4 (339-391)||(6036687-6036739)
chr4 (153-224)||(14138973-14139044)
chr4 (159-229)||(28675783-28675853)
chr4 (149-227)||(42051200-42051278)
chr4 (153-202)||(38705765-38705814)
chr4 (169-224)||(39259995-39260050)
chr4 (148-226)||(564198-564276)
chr4 (149-187)||(36937503-36937541)
chr4 (149-227)||(50297725-50297803)
chr4 (170-227)||(29508637-29508694)
chr4 (149-226)||(36989829-36989906)
[»] chr1 (9 HSPs)
chr1 (149-230)||(1035560-1035641)
chr1 (151-228)||(11018032-11018109)
chr1 (146-195)||(37316659-37316708)
chr1 (169-227)||(8644801-8644859)
chr1 (149-227)||(31262553-31262632)
chr1 (159-225)||(28490596-28490662)
chr1 (148-222)||(41884706-41884780)
chr1 (146-182)||(15281399-15281435)
chr1 (149-229)||(29033026-29033106)
[»] chr8 (16 HSPs)
chr8 (149-227)||(31313302-31313380)
chr8 (149-225)||(7811823-7811900)
chr8 (159-223)||(35865131-35865195)
chr8 (149-225)||(7774591-7774669)
chr8 (149-225)||(7791238-7791316)
chr8 (149-227)||(6530301-6530379)
chr8 (149-227)||(8867177-8867255)
chr8 (169-218)||(21372447-21372496)
chr8 (149-225)||(5493374-5493450)
chr8 (149-193)||(8769086-8769130)
chr8 (149-224)||(45244677-45244752)
chr8 (149-195)||(40505342-40505388)
chr8 (153-227)||(42685705-42685778)
chr8 (148-193)||(26014419-26014464)
chr8 (151-195)||(8114394-8114438)
chr8 (146-194)||(41720141-41720189)
[»] chr6 (6 HSPs)
chr6 (151-225)||(30249141-30249215)
chr6 (149-195)||(29285996-29286042)
chr6 (151-224)||(6469640-6469713)
chr6 (144-227)||(14215150-14215233)
chr6 (159-227)||(3787423-3787491)
chr6 (149-225)||(11659252-11659328)
[»] scaffold0482 (1 HSPs)
scaffold0482 (149-225)||(597-675)
[»] scaffold0116 (2 HSPs)
scaffold0116 (149-195)||(3050-3096)
scaffold0116 (159-195)||(6101-6137)
[»] scaffold0542 (1 HSPs)
scaffold0542 (149-228)||(4509-4588)
[»] scaffold0181 (1 HSPs)
scaffold0181 (146-182)||(10830-10866)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 40845997 - 40845784
Alignment:
Q  15 aatatgggacaagtttagtaataaatgatataattcaaagctcgttagctggtgagtgggtataattcacttatcagttaattagccttgaattataaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||| |  |||||||||||||||||||||||||    
T  40845997 aatatgggacaagtttagtaataaatgatataattcaaagctaattagttggtgagtgggtataattcactcactagttaattagccttgaattataaaa 40845898  T
Q  115 actcaaagggtcatgttaacttgtactctaattaaatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaa 214  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||    
T  40845897 actcaaagggtcatgttaacttatactctaattaaatgcacgatttttgatacatatatttttataatgagttccttaacatatgtccttaagggcacaa 40845798  T
Q  215 attaacatttgcca 228  Q
    ||||||||||||||    
T  40845797 attaacatttgcca 40845784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 233 - 391
Target Start/End: Complemental strand, 40842525 - 40842367
Alignment:
Q  233 atttggtgtttattcaaaatgcttgcaatctttgagactttgcattatctgatatcgaaattccacttgggtcctgattcttcggtgaaggaagctgcag 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40842525 atttggtgtttattcaaaatgcttgcaatctttgagactttgcatcatctgatatcgaaattccacttgggtcctgattcttcggtgaaggaagctgcag 40842426  T
Q  333 ttacagtccaaaacagattaggagaagcaatcagggaccttttcttgaaactaaattat 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40842425 ttacagtccaaaacagattaggagaagcaatcagggaccttttcttgaaactaaattat 40842367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 233 - 391
Target Start/End: Complemental strand, 31474965 - 31474807
Alignment:
Q  233 atttggtgtttattcaaaatgcttgcaatctttgagactttgcattatctgatatcgaaattccacttgggtcctgattcttcggtgaaggaagctgcag 332  Q
    ||||||||||||||||||||||| |||||||||||||| |||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31474965 atttggtgtttattcaaaatgctcgcaatctttgagacattgcatcatttgatatcgaaattcaacttgggtcctgattcttcggtgaaggaagctgcag 31474866  T
Q  333 ttacagtccaaaacagattaggagaagcaatcagggaccttttcttgaaactaaattat 391  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31474865 ttagagtccaaaacagattaggagaagcaatcagggaccttttcttgaaactaaattat 31474807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 41144669 - 41144745
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttg 225  Q
    ||||||||| ||||||||  |||||||||||||||||||||||||||  ||||||| ||| |||||  |||||||||    
T  41144669 aatgcacgacttttgatatgtatatttctataatgagttccttaacatgtgcccttgaggacacaagataacatttg 41144745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 10523733 - 10523682
Alignment:
Q  144 aattaaatgcacgatttttgatacatatatttctataatgagttccttaaca 195  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  10523733 aattgaatgcacgacttttgatacgtatatttctataatgagttccttaaca 10523682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 14547901 - 14547818
Alignment:
Q  144 aattaaatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    |||||| ||||||| ||||||| | ||||||||||||| || ||||||||||  ||||||| |||||| || ||||||||||||    
T  14547901 aattaactgcacgacttttgatgcgtatatttctataaggaattccttaacatgtgcccttgagggcataagttaacatttgcc 14547818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 967635 - 967573
Alignment:
Q  150 atgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcac 212  Q
    |||||| | |||| ||||||||||||||||||||| ||||||||||  ||||||| |||||||    
T  967635 atgcaccacttttaatacatatatttctataatgaattccttaacatgtgcccttgagggcac 967573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 8222112 - 8222186
Alignment:
Q  150 atgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacattt 224  Q
    ||||||| ||||| |||| |||||||||||||||||||| ||||||  || | ||||| |||||| |||||||||    
T  8222112 atgcacggtttttaatacgtatatttctataatgagttcattaacatgtgtcattaagagcacaagttaacattt 8222186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 554386 - 554422
Alignment:
Q  159 ttttgatacatatatttctataatgagttccttaaca 195  Q
    |||| ||||||||||||||||||||||||||||||||    
T  554386 ttttaatacatatatttctataatgagttccttaaca 554422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 7738557 - 7738613
Alignment:
Q  169 tatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttg 225  Q
    ||||||||||||||||||| |||||||  ||| ||||| ||||||| ||||||||||    
T  7738557 tatatttctataatgagttacttaacatgtgctcttaaaggcacaagttaacatttg 7738613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 29557541 - 29557470
Alignment:
Q  153 cacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacattt 224  Q
    ||||| |||||||||||||||||||||||| | ||| ||||||   || ||| |||| ||||||||||||||    
T  29557541 cacgacttttgatacatatatttctataataaattctttaacatgcgcgcttgagggtacaaattaacattt 29557470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 2352245 - 2352175
Alignment:
Q  156 gatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgc 226  Q
    |||||||||||| | ||||| ||||||||||| ||||| | |||  ||||||||||||| ||| |||||||    
T  2352245 gatttttgatacgtttatttatataatgagtttcttaatatatgttcttaagggcacaatttaccatttgc 2352175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 25102066 - 25102141
Alignment:
Q  146 ttaaatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacat 222  Q
    |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| |||||||    
T  25102066 ttaaatacacaatttttgatacatatatttctataatgag-tccttaacatatgcccttgagggcacaagttaacat 25102141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 47850012 - 47850090
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    |||||| || |||||||| ||||||||||||||||||||||||||||  || |||| ||| ||||||||||||||||||    
T  47850012 aatgcatgaattttgatagatatatttctataatgagttccttaacatgtgtccttgaggacacaaattaacatttgcc 47850090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 25134175 - 25134255
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgccat 229  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||  || | || || |||||| ||||||||| ||||    
T  25134175 aatgcacgacttttgatacatatatttctataatgagttccttaacatgtgtctttgagagcacaagttaacatttaccat 25134255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 47006669 - 47006589
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgccat 229  Q
    ||||||||| ||||||| |  ||||||||||||  ||||||||||||  ||||||| ||||||||| ||||||||||||||    
T  47006669 aatgcacgacttttgatgcgaatatttctataaaaagttccttaacatgtgcccttgagggcacaagttaacatttgccat 47006589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 35306617 - 35306684
Alignment:
Q  159 ttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgc 226  Q
    ||||||||  |||||||||||||||||||  |||||| |||||||| ||||||||| |||||||||||    
T  35306617 ttttgataagtatatttctataatgagtttgttaacatatgcccttgagggcacaagttaacatttgc 35306684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 42891094 - 42891016
Alignment:
Q  146 ttaaatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacattt 224  Q
    ||||| |||||||||| ||||||||||||||||||||||||| ||||||| |||   || |||| |||||||| |||||    
T  42891094 ttaaacgcacgattttcgatacatatatttctataatgagtttcttaacatatgttattgagggtacaaattaccattt 42891016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 26040894 - 26040814
Alignment:
Q  146 ttaaatgcacga-tttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttg 225  Q
    |||||||||||| |||||||||| ||||||||||||| ||||||||||||   || | || || |||||||||||||||||    
T  26040894 ttaaatgcacgactttttgatacgtatatttctataacgagttccttaacgtgtgtcattgagagcacaaattaacatttg 26040814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 18030066 - 18029983
Alignment:
Q  144 aattaaatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    |||| ||||||||| ||||  ||||||||||||| || | ||||||||||||  ||||||| |||||| || ||||||||||||    
T  18030066 aattgaatgcacgacttttcgtacatatatttctttattaagttccttaacatgtgcccttgagggcataagttaacatttgcc 18029983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 39430331 - 39430254
Alignment:
Q  151 tgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcca 228  Q
    ||||||| ||||||||||||| |||||||||||||||| |||| |   |||||| |||||| || ||| |||||||||    
T  39430331 tgcacgacttttgatacatatgtttctataatgagttctttaagatgcgcccttgagggcataagttagcatttgcca 39430254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 4539927 - 4539883
Alignment:
Q  151 tgcacgatttttgatacatatatttctataatgagttccttaaca 195  Q
    |||||||||||| |||||||||||| ||||||||||| |||||||    
T  4539927 tgcacgatttttaatacatatatttttataatgagtttcttaaca 4539883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 47069307 - 47069383
Alignment:
Q  151 tgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    ||||||| ||||||||  |||||||| ||||| | |||||||| |  ||||||||||||| ||| ||||||||||||    
T  47069307 tgcacgacttttgatatgtatatttccataataaattccttaaaatgtgcccttaagggcgcaagttaacatttgcc 47069383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 52859627 - 52859686
Alignment:
Q  169 tatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcca 228  Q
    |||||||||| ||||||||  |||||| ||| | || |||||||||||||||||||||||    
T  52859627 tatatttctacaatgagttatttaacatatgtcattgagggcacaaattaacatttgcca 52859686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 19961197 - 19961131
Alignment:
Q  159 ttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttg 225  Q
    ||||||||| |||||||||||||| ||||||||||||  |  |||| ||||||||| ||| ||||||    
T  19961197 ttttgatacgtatatttctataattagttccttaacatgtatccttcagggcacaagttatcatttg 19961131  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 25096348 - 25096290
Alignment:
Q  156 gatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaa 214  Q
    ||||||| || | |||||||||||||||||||||||||||  |||| || |||||||||    
T  25096348 gattttttatgcgtatatttctataatgagttccttaacatgtgcctttgagggcacaa 25096290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 37919231 - 37919185
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaaca 195  Q
    ||||||| ||||||||||| ||||||| ||||||||||| |||||||    
T  37919231 aatgcacaatttttgatacgtatatttatataatgagtttcttaaca 37919185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 27117959 - 27118028
Alignment:
Q  159 ttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcca 228  Q
    |||| |||||||||||| || ||||||||||| ||||  ||||||| ||||||||  ||| |||||||||    
T  27117959 ttttaatacatatatttttacaatgagttcctcaacatgtgcccttgagggcacacgttagcatttgcca 27118028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 48192655 - 48192731
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttg 225  Q
    ||||| |||||||| |||  |||||||||||||| |||| |||||||  || |||| | || |||||||||||||||    
T  48192655 aatgcgcgatttttaataagtatatttctataataagtttcttaacatgtgtccttgaaggtacaaattaacatttg 48192731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 20061143 - 20061223
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgccat 229  Q
    ||||||| | ||||||||| |||||||||||||||||||||||| ||  ||||||| ||||||||| ||||||||||||||    
T  20061143 aatgcacaacttttgatacgtatatttctataatgagttccttagcatgtgcccttgagggcacaagttaacatttgccat 20061223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 32294598 - 32294668
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaa 219  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||  ||||||| ||||||||| ||||    
T  32294598 aatgcacgacttttaatacatatatttctataatgagttccttaacatgtgcccttgagggcacaagttaa 32294668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 44068872 - 44068946
Alignment:
Q  151 tgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttg 225  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||  || | || || |||||||||||||||||    
T  44068872 tgcacgacttttgatacatatatttctataatgaattccttaacatgtgtctttgagagcacaaattaacatttg 44068946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 14275828 - 14275749
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgccat 229  Q
    |||||| || ||||||||| ||||||||||||||||||||||||| |  |||||||  |||||||| ||| ||||||||||    
T  14275828 aatgcatgacttttgatacgtatatttctataatgagttccttaatatgtgccctt-ggggcacaagttagcatttgccat 14275749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 3348370 - 3348291
Alignment:
Q  148 aaatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    |||||||||| |||||||  |||||||||||||| || || ||||||| |||||||| |||||  || ||||||||||||    
T  3348370 aaatgcacgacttttgattaatatatttctataaggaatttcttaacatatgcccttgagggcttaagttaacatttgcc 3348291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 409970 - 409893
Alignment:
Q  151 tgcacgatttttgatacatatatttctataatgagttccttaacacatgccc-ttaagggcacaaattaacatttgcc 227  Q
    ||||||| ||||||||  | ||||||||||| ||||||||||||| |||||| || | ||||||| ||||||||||||    
T  409970 tgcacgacttttgataagtttatttctataacgagttccttaacatatgccctttgaaggcacaagttaacatttgcc 409893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 2290336 - 2290287
Alignment:
Q  146 ttaaatgcacgatttttgatacatatatttctataatgagttccttaaca 195  Q
    |||||||||||| ||| ||||||||||||| |||||||||| ||||||||    
T  2290336 ttaaatgcacgaatttcgatacatatatttttataatgagtgccttaaca 2290287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 30549130 - 30549050
Alignment:
Q  151 tgcacgatttttgatacatatatttctataatgagttccttaacacat--gcccttaagggcacaaattaacatttgccat 229  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||||  |  ||||||  | |||||| ||||||||||||||    
T  30549130 tgcacgacttttgatacgtatatttctataaagagttccttaacatgtgcgcccttgtgagcacaagttaacatttgccat 30549050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 39420301 - 39420361
Alignment:
Q  169 tatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgccat 229  Q
    |||||||||||||||||||||||||||  ||||||| || | |||| ||| ||||||||||    
T  39420301 tatatttctataatgagttccttaacatgtgcccttgagcgaacaagttagcatttgccat 39420361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 25626337 - 25626416
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcca 228  Q
    |||| |||| ||||||||| |||||||||||||| ||||||||||||  ||   || ||||||||| ||| |||||||||    
T  25626337 aatgtacgacttttgatacgtatatttctataataagttccttaacatgtgttattgagggcacaagttagcatttgcca 25626416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 37230639 - 37230556
Alignment:
Q  144 aattaaatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    |||| |||||| || ||||||||||||||||| |||||||| |||||| |||  || |||| | ||||||| ||| ||||||||    
T  37230639 aattgaatgcatgacttttgatacatatatttatataatgatttcctttacatgtgtccttgaaggcacaagttagcatttgcc 37230556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 7061593 - 7061535
Alignment:
Q  153 cacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggca 211  Q
    ||||| ||||||| |||||||||||||||| ||||| ||||||  ||| ||||||||||    
T  7061593 cacgacttttgatgcatatatttctataataagttctttaacatgtgctcttaagggca 7061535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 7743810 - 7743859
Alignment:
Q  146 ttaaatgcacgatttttgatacatatatttctataatgagttccttaaca 195  Q
    |||| ||||||| ||| ||| |||||||||||||||||||||| ||||||    
T  7743810 ttaactgcacgactttcgatgcatatatttctataatgagttctttaaca 7743859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 32786863 - 32786785
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||  ||||||| ||||||||| ||| ||||||||    
T  32786863 aatgcacgacttttgatacgtatatttatataatgagttccttaacatgtgcccttgagggcacaagttagcatttgcc 32786785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 28337275 - 28337215
Alignment:
Q  151 tgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggca 211  Q
    |||||||||||| |||||||||||||||||||||||| |||||||  ||||||| ||||||    
T  28337275 tgcacgattttttatacatatatttctataatgagtttcttaacatgtgcccttgagggca 28337215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 7458003 - 7458072
Alignment:
Q  153 cacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacat 222  Q
    |||||||||||||||||||||||||||||||| ||  ||||||  || | || | |||||||||||||||    
T  7458003 cacgatttttgatacatatatttctataatgaatttattaacatgtgtcatttatggcacaaattaacat 7458072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 34964045 - 34964094
Alignment:
Q  146 ttaaatgcacgatttttgatacatatatttctataatgagttccttaaca 195  Q
    |||| ||||||| |||||||| ||||||||||||||||| ||| ||||||    
T  34964045 ttaactgcacgacttttgataaatatatttctataatgaattctttaaca 34964094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 45837859 - 45837803
Alignment:
Q  171 tatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    ||||||||||||||||  |||||||  |||||||  |||||||||||| ||||||||    
T  45837859 tatttctataatgagtatcttaacatgtgcccttgtgggcacaaattagcatttgcc 45837803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 20537411 - 20537472
Alignment:
Q  169 tatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgccatt 230  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |||||    
T  20537411 tatatttttataatgagttccttaacatatgcccttgagggcacaaattaacattttccatt 20537472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 27918424 - 27918501
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgc 226  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||  || |||| ||||||||| ||| |||||||    
T  27918424 aatgcacgacttttgatacatatatttctataacgagttccttaacatgtgtccttgagggcacaagttagcatttgc 27918501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 1961683 - 1961605
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    ||||||||| ||||||||  |||||||||||||| ||||  ||||||  ||||||| ||||||||||||||||||||||    
T  1961683 aatgcacgacttttgatatttatatttctataataagttttttaacatgtgcccttgagggcacaaattaacatttgcc 1961605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 22019462 - 22019384
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    |||| ||||||||| || |||||||||||||||||||||| ||||||  || |||| ||||||||| ||| ||||||||    
T  22019462 aatgtacgatttttaatgcatatatttctataatgagttctttaacatgtgtccttgagggcacaagttagcatttgcc 22019384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 6036739 - 6036687
Alignment:
Q  339 tccaaaacagattaggagaagcaatcagggaccttttcttgaaactaaattat 391  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  6036739 tccaaatcaggttaggagaagcaatcagtgaccttttcttgaaactgaattat 6036687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 14139044 - 14138973
Alignment:
Q  153 cacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacattt 224  Q
    ||||||||||||||| ||||||||||||| | |||| ||||||  ||||||| | ||||||| |||||||||    
T  14139044 cacgatttttgatacgtatatttctataaagggttcattaacatgtgcccttgaaggcacaagttaacattt 14138973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 28675783 - 28675853
Alignment:
Q  159 ttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgccat 229  Q
    ||||||||  |||||||||||||||| ||||||||||  ||||||||||| || || ||| ||||||||||    
T  28675783 ttttgatatgtatatttctataatgacttccttaacatgtgcccttaaggacataagttagcatttgccat 28675853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 42051200 - 42051278
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    ||||||||| ||||||||||||||||| |||||||||||| |||| |  || |||| | ||||||| ||| ||||||||    
T  42051200 aatgcacgacttttgatacatatatttttataatgagttcattaatatgtgtccttgatggcacaagttagcatttgcc 42051278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 38705814 - 38705765
Alignment:
Q  153 cacgatttttgatacatatatttctataatgagttccttaacacatgccc 202  Q
    ||||||||||||| |||||||||||||||| |||||||||| || |||||    
T  38705814 cacgatttttgatgcatatatttctataataagttccttaatacgtgccc 38705765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 39260050 - 39259995
Alignment:
Q  169 tatatttctataatgagttccttaacacatgcccttaagggcacaaattaacattt 224  Q
    ||||||| ||||||| |||||||||||  ||| ||||| |||||||||||||||||    
T  39260050 tatatttttataatgggttccttaacatctgctcttaaaggcacaaattaacattt 39259995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 564198 - 564276
Alignment:
Q  148 aaatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgc 226  Q
    |||||||| |||||| |||| |||||||||||||| |  |||||||||  | ||||| ||| ||||| |||||||||||    
T  564198 aaatgcacaatttttaatacgtatatttctataataaactccttaacatgtacccttgaggacacaagttaacatttgc 564276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 36937503 - 36937541
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagtt 187  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  36937503 aatgcacgtttttttatacatatatttctataatgagtt 36937541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 50297725 - 50297803
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    ||||||||  ||||||||  | ||||||||||||||||  |||||||  ||||||| ||||||||| ||| ||||||||    
T  50297725 aatgcacgccttttgatatgtgtatttctataatgagtatcttaacatgtgcccttgagggcacaagttagcatttgcc 50297803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 29508694 - 29508637
Alignment:
Q  170 atatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    |||||| |||||| ||||||||||||  ||||||| |||||| || ||||||||||||    
T  29508694 atatttttataattagttccttaacatgtgcccttgagggcataagttaacatttgcc 29508637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 36989906 - 36989829
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgc 226  Q
    ||||||||| |||| |||  ||||||| ||||||||||| ||||| |  ||||||| ||| ||||| |||||||||||    
T  36989906 aatgcacgacttttaatatgtatatttttataatgagtttcttaatatgtgcccttgaggacacaagttaacatttgc 36989829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 1035641 - 1035560
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgccatt 230  Q
    |||||| || ||||||||  |||||||||||||||||||||||||||  ||||||| ||||||||| |||||||||| ||||    
T  1035641 aatgcaagacttttgatatgtatatttctataatgagttccttaacatgtgcccttgagggcacaagttaacatttgtcatt 1035560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 11018032 - 11018109
Alignment:
Q  151 tgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcca 228  Q
    ||||||| |||| |||| |||||||||||||| ||||||||||||  ||||||| || |||||| |||||||||||||    
T  11018032 tgcacgacttttaatacgtatatttctataataagttccttaacatgtgcccttgagagcacaagttaacatttgcca 11018109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 37316659 - 37316708
Alignment:
Q  146 ttaaatgcacgatttttgatacatatatttctataatgagttccttaaca 195  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  37316659 ttaaatacacgatttttgatacatatatttttataatgagttccttaaca 37316708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 8644801 - 8644859
Alignment:
Q  169 tatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    |||||||||||||||||||  ||||||  ||||||| ||||||||| ||||||||||||    
T  8644801 tatatttctataatgagtttattaacatgtgcccttgagggcacaagttaacatttgcc 8644859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 31262632 - 31262553
Alignment:
Q  149 aatgcacgatttttgatacat-atatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    ||||||| ||||||||||  | |||||||||||||||||| ||||| | |||||||| |||| |||| ||| ||||||||    
T  31262632 aatgcacaatttttgatatgttatatttctataatgagtttcttaatatatgcccttgagggtacaagttagcatttgcc 31262553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 28490596 - 28490662
Alignment:
Q  159 ttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttg 225  Q
    ||||||||  |||||||||||||||| ||||||||||  || | ||||| |||||||||| ||||||    
T  28490596 ttttgatatgtatatttctataatgaattccttaacatgtgtcattaagagcacaaattagcatttg 28490662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 41884706 - 41884780
Alignment:
Q  148 aaatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacat 222  Q
    ||||||| || ||||||||  ||| ||||||||||||||| |||||||  |||| || ||||||||| |||||||    
T  41884706 aaatgcatgacttttgatatgtatgtttctataatgagttacttaacatgtgccattgagggcacaagttaacat 41884780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 15281399 - 15281435
Alignment:
Q  146 ttaaatgcacgatttttgatacatatatttctataat 182  Q
    ||||||||||||||||| || ||||||||||||||||    
T  15281399 ttaaatgcacgatttttaatgcatatatttctataat 15281435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 29033026 - 29033106
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgccat 229  Q
    ||||||| | ||||||||| |||||||||||| ||| ||||||||||  || | || | ||||||||||| ||||| ||||    
T  29033026 aatgcacaacttttgatacgtatatttctatactgatttccttaacatgtgtcattgaaggcacaaattagcatttaccat 29033106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 31313380 - 31313302
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    |||||| || ||||||||| |||||||||||||||| ||||||||||  ||||||| ||||||||| ||| ||||||||    
T  31313380 aatgcatgacttttgatacgtatatttctataatgacttccttaacatgtgcccttgagggcacaagttagcatttgcc 31313302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 7811900 - 7811823
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttcctt-aacacatgcccttaagggcacaaattaacatttg 225  Q
    ||||||||| |||||||||||||||||||||||||||||  || ||||  | | ||||||||||||| ||||||||||    
T  7811900 aatgcacgacttttgatacatatatttctataatgagtttttttaacatgtactcttaagggcacaagttaacatttg 7811823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 35865195 - 35865131
Alignment:
Q  159 ttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatt 223  Q
    ||||||||  |||||||||||||| |||||||||||| |||||||| |||| |||| ||||||||    
T  35865195 ttttgatatgtatatttctataataagttccttaacatatgcccttgagggaacaacttaacatt 35865131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 7774669 - 7774591
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgag--ttccttaacacatgcccttaagggcacaaattaacatttg 225  Q
    ||||||||| |||||||||||||||||||||||||||  ||  ||||||  | | ||||||||||||| ||||||||||    
T  7774669 aatgcacgacttttgatacatatatttctataatgagttttttttaacatgtactcttaagggcacaagttaacatttg 7774591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 7791316 - 7791238
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgag--ttccttaacacatgcccttaagggcacaaattaacatttg 225  Q
    ||||||||| |||||||||||||||||||||||||||  ||  ||||||  | | ||||||||||||| ||||||||||    
T  7791316 aatgcacgacttttgatacatatatttctataatgagttttttttaacatgtactcttaagggcacaagttaacatttg 7791238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 6530379 - 6530301
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    ||||||||| |||| || | ||||||||| |||| ||||||||||||  ||||||| ||||||||| ||| ||||||||    
T  6530379 aatgcacgactttttatgcttatatttctttaataagttccttaacatgtgcccttgagggcacaagttagcatttgcc 6530301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 8867255 - 8867177
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    ||||||| | ||||||| | |||||||||||||||||||| ||||||  ||||||| | ||||||| ||||||| ||||    
T  8867255 aatgcacaacttttgatgcgtatatttctataatgagttctttaacatgtgcccttcaaggcacaagttaacatgtgcc 8867177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 21372496 - 21372447
Alignment:
Q  169 tatatttctataatgagttccttaacacatgcccttaagggcacaaatta 218  Q
    |||||||||||||| |||||||||||| || ||||| |||||||||||||    
T  21372496 tatatttctataataagttccttaacatattcccttgagggcacaaatta 21372447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 5493374 - 5493450
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttg 225  Q
    ||||||||| ||||||| | | |||||||||||||| || |||||||  ||||||| ||||||||| ||| ||||||    
T  5493374 aatgcacgacttttgatgcgtgtatttctataatgactttcttaacatgtgcccttgagggcacaagttagcatttg 5493450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 8769086 - 8769130
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaa 193  Q
    ||||||| | |||| ||||||||||||||||||||||||||||||    
T  8769086 aatgcacaactttttatacatatatttctataatgagttccttaa 8769130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 45244752 - 45244677
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacattt 224  Q
    ||||||||| |||| |||| |||||||||||||||||||| ||||||  || | ||| || ||||| |||||||||    
T  45244752 aatgcacgacttttaatacgtatatttctataatgagttcattaacatgtgtctttagggacacaagttaacattt 45244677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 40505342 - 40505388
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaaca 195  Q
    ||||||||| |||||||| ||||||||  ||||||||||||||||||    
T  40505342 aatgcacgacttttgatatatatattttcataatgagttccttaaca 40505388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 42685778 - 42685705
Alignment:
Q  153 cacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    ||||| |||||||||| ||||||||||||| | |||||| |||  |||| | |||||||||||||| ||||||||    
T  42685778 cacgacttttgatacacatatttctataataaattcctt-acatgtgccttcaagggcacaaattagcatttgcc 42685705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 26014464 - 26014419
Alignment:
Q  148 aaatgcacgatttttgatacatatatttctataatgagttccttaa 193  Q
    |||||||||| |||||||||||||||||  |||||||||| |||||    
T  26014464 aaatgcacgacttttgatacatatattttaataatgagtttcttaa 26014419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 8114394 - 8114438
Alignment:
Q  151 tgcacgatttttgatacatatatttctataatgagttccttaaca 195  Q
    ||||||| |||| |||||||||||| ||||||||||| |||||||    
T  8114394 tgcacgacttttaatacatatatttttataatgagtttcttaaca 8114438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 41720189 - 41720141
Alignment:
Q  146 ttaaatgcacgatttttgatacatatatttctataatgagttccttaac 194  Q
    |||||||||||| |||| || ||||||||| ||||| ||||||||||||    
T  41720189 ttaaatgcacgacttttaatccatatatttatataaagagttccttaac 41720141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 30249215 - 30249141
Alignment:
Q  151 tgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttg 225  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||  || | |||||||||||| ||| ||||||    
T  30249215 tgcacgaattttgatacctatatttctataatgagttccttaacatgtgtcattaagggcacaagttagcatttg 30249141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 29286042 - 29285996
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaaca 195  Q
    |||||||||||||| |||| |||||||||||||||||||| ||||||    
T  29286042 aatgcacgattttttatacgtatatttctataatgagttcattaaca 29285996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 6469640 - 6469713
Alignment:
Q  151 tgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacattt 224  Q
    ||||||| |||| ||| ||||||||||||||||| |||||||||| ||||| || |||| |||| ||| |||||    
T  6469640 tgcacgacttttaataaatatatttctataatgaattccttaacatatgccattgagggtacaagttagcattt 6469713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 14215150 - 14215233
Alignment:
Q  144 aattaaatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    |||| ||| ||||||||||||||||||||||  |||||| ||||| |||| |  ||||||| | | ||||| ||||||||||||    
T  14215150 aattgaatacacgatttttgatacatatattcttataataagttcattaagatgtgcccttcaagacacaagttaacatttgcc 14215233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 3787491 - 3787423
Alignment:
Q  159 ttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcc 227  Q
    |||| |||| ||||||| |||||| ||||| ||||||  || |||| ||||||||||||| ||||||||    
T  3787491 ttttaatacgtatatttttataataagttctttaacatgtgtccttgagggcacaaattagcatttgcc 3787423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 11659328 - 11659252
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttg 225  Q
    |||||| ||||||| |||||||||||||||||||   ||||||||||  | ||||| |||||| || ||| ||||||    
T  11659328 aatgcatgattttttatacatatatttctataatatattccttaacatgttcccttgagggcataagttagcatttg 11659252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 597 - 675
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgag--ttccttaacacatgcccttaagggcacaaattaacatttg 225  Q
    ||||||||| |||||||||||||||||||||||||||  ||  ||||||  | | ||||||||||||| ||||||||||    
T  597 aatgcacgacttttgatacatatatttctataatgagttttttttaacatgtactcttaagggcacaagttaacatttg 675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 3050 - 3096
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaaca 195  Q
    |||||| || ||||||||||||||| |||||||||||||||||||||    
T  3050 aatgcatgacttttgatacatatatatctataatgagttccttaaca 3096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 6101 - 6137
Alignment:
Q  159 ttttgatacatatatttctataatgagttccttaaca 195  Q
    ||||||||||||||| |||||||||||||||||||||    
T  6101 ttttgatacatatatatctataatgagttccttaaca 6137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 4588 - 4509
Alignment:
Q  149 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggcacaaattaacatttgcca 228  Q
    ||||||||  ||||||||  ||||||||||||||||||  |||||||  || |||| ||||||||| ||| |||||||||    
T  4588 aatgcacgcattttgatatgtatatttctataatgagtatcttaacatgtgtccttgagggcacaagttagcatttgcca 4509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 10830 - 10866
Alignment:
Q  146 ttaaatgcacgatttttgatacatatatttctataat 182  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  10830 ttaaatacacgacttttgatacatatatttctataat 10866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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