View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_27 (Length: 376)
Name: NF19776_low_27
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 41 - 361
Target Start/End: Original strand, 27771785 - 27772105
Alignment:
| Q |
41 |
tttgagcatcatctaaaccaaaggttgaaacttgacaattttcgcggcgattttcttggatttcatcaactgggtcattggtgtttcttcttgcagattc |
140 |
Q |
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| T |
27771785 |
tttgagcatcatctaaaccaaaggttgaaacttgacaattttcgcggcgattttcttggatttcatcaactgggtcattggtgtttcttcttgaagattc |
27771884 |
T |
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| Q |
141 |
tctgtgaccacaatatttagatattagagtgtaataagttagtagtaaaaaagcagtggctaaaactcccaaaattgcaataacaagaggagagaaatat |
240 |
Q |
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| T |
27771885 |
tctgtgaccacaatatttggatattagagtgtaataagttagtagtaaaaaagcagtggctaaaactcccaaaattgcaataacaagaggagaaaaatat |
27771984 |
T |
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| Q |
241 |
ggttttgaatcatcatcaggatattgaaatggtggtggtggtggaggagtgtaaactatgtagcaccattgcggacaatacatgctacaaaatccttgag |
340 |
Q |
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| T |
27771985 |
ggttttgaatcatcatcagggtattgaaaaggtggtggtggtggaggagtgtaaactatgtagcaccattgcggacaatacacgctacaaaatccttgag |
27772084 |
T |
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| Q |
341 |
aacaatctttgctgtttatat |
361 |
Q |
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| T |
27772085 |
aacaatctttgctgtttatat |
27772105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 136 - 353
Target Start/End: Original strand, 12618095 - 12618312
Alignment:
| Q |
136 |
gattctctgtgaccacaatatttagatattagagtgtaataagttagtagtaaaaaagcagtggctaaaactcccaaaattgcaataacaagaggagaga |
235 |
Q |
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| T |
12618095 |
gattctctgcgaccacaatactttgatattatggtgtagtaagttacaagaagaaaagcacttgctaagattccaatgattgcaatgacaagaggagaaa |
12618194 |
T |
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| Q |
236 |
aatatggttttgaatcatcatcaggatattgaaatggtggtggtggtggaggagtgtaaactatgtagcaccattgcggacaatacatgctacaaaatcc |
335 |
Q |
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| T |
12618195 |
aatttggacttgaatcttcatcagggaattcaaagggagaaggagaaggtggagggtagattgcatagcaccattgtggacaatagacgctacaaaaacc |
12618294 |
T |
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| Q |
336 |
ttgagaacaatctttgct |
353 |
Q |
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| T |
12618295 |
ttgagaacaatctttgct |
12618312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10339702 - 10339659
Alignment:
| Q |
1 |
ttatgcattttctatttgctttaccctttatgggttcccttttg |
44 |
Q |
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| T |
10339702 |
ttatgcattttctatttgctttagcctttctgggttctcttttg |
10339659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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