View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_28 (Length: 371)
Name: NF19776_low_28
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 29 - 351
Target Start/End: Original strand, 23938334 - 23938655
Alignment:
| Q |
29 |
cccctaacatgaagaatggagcatcaacatcacaagacctacgacataagatttttagagtgatatgttatgattcttgggcattgttgaaactaaaaat |
128 |
Q |
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| T |
23938334 |
cccctaacatgaagaatggagcatcaacatcacaagacctacgacataagatttttagagttatatgttatgattgttgggcattgttgaaactaaaaat |
23938433 |
T |
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| Q |
129 |
tgtaatttgtgagatatattatccatgataaatattacgacgattacaaattacgatttttattacctaaaattcaaccatga-gtaactacaacttaac |
227 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
23938434 |
tgtaatttgtgagatatattacccatgataaatattacgacgattacaaattacgatttttattacctaaagttcaaccatgaggtaactacaacttaac |
23938533 |
T |
|
| Q |
228 |
caaaaattgttccacaagaatcgaacttaggatatgccgaaatgtctatatagagttgaatcttgtaatctatagactatgaaaaacatcatcataatgc |
327 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23938534 |
caaaaattattccacaagaatcgaacttaggatcggccgaaatgtctatatagagttgaatcttgtaatc--tagactatgaaaaacatcatcataatgc |
23938631 |
T |
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| Q |
328 |
tcatgttacaataatagtttggct |
351 |
Q |
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|| ||||||||||||||||||||| |
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| T |
23938632 |
tcctgttacaataatagtttggct |
23938655 |
T |
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