View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19776_low_29 (Length: 364)

Name: NF19776_low_29
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19776_low_29
NF19776_low_29
[»] chr4 (15 HSPs)
chr4 (1-347)||(55783407-55783753)
chr4 (1-343)||(55847589-55847931)
chr4 (33-117)||(21714051-21714135)
chr4 (33-182)||(36306720-36306869)
chr4 (18-137)||(42907807-42907925)
chr4 (17-91)||(30034593-30034667)
chr4 (32-94)||(36919057-36919119)
chr4 (38-137)||(9280945-9281044)
chr4 (32-94)||(8843903-8843965)
chr4 (32-94)||(8856867-8856929)
chr4 (18-110)||(7334268-7334358)
chr4 (32-121)||(37384207-37384295)
chr4 (32-68)||(16575046-16575082)
chr4 (18-94)||(17113102-17113177)
chr4 (32-80)||(33516185-33516233)
[»] chr8 (6 HSPs)
chr8 (18-104)||(29918521-29918607)
chr8 (32-117)||(5793513-5793598)
chr8 (32-124)||(8545417-8545509)
chr8 (32-124)||(28345419-28345511)
chr8 (18-94)||(6388603-6388679)
chr8 (32-124)||(36274971-36275062)
[»] chr6 (4 HSPs)
chr6 (18-124)||(9402503-9402609)
chr6 (32-94)||(14321795-14321857)
chr6 (37-92)||(34179108-34179164)
chr6 (18-70)||(34346136-34346188)
[»] chr1 (5 HSPs)
chr1 (36-124)||(39219191-39219279)
chr1 (34-174)||(48125701-48125841)
chr1 (32-71)||(47644980-47645019)
chr1 (18-80)||(8880363-8880425)
chr1 (37-122)||(33293590-33293675)
[»] chr7 (1 HSPs)
chr7 (32-176)||(3157016-3157160)
[»] chr2 (7 HSPs)
chr2 (32-176)||(25210306-25210450)
chr2 (32-124)||(13531878-13531970)
chr2 (82-176)||(45256802-45256896)
chr2 (32-94)||(13954674-13954736)
chr2 (32-94)||(14095881-14095943)
chr2 (18-100)||(40359259-40359341)
chr2 (18-71)||(31600889-31600942)
[»] chr3 (3 HSPs)
chr3 (32-105)||(772881-772953)
chr3 (19-71)||(27252482-27252534)
chr3 (82-173)||(53631882-53631973)
[»] chr5 (4 HSPs)
chr5 (1-110)||(40187739-40187850)
chr5 (18-124)||(7350476-7350582)
chr5 (35-176)||(27900418-27900559)
chr5 (32-184)||(16311302-16311453)
[»] scaffold1322 (1 HSPs)
scaffold1322 (32-71)||(1039-1078)


Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 55783407 - 55783753
Alignment:
Q  1 gtgtcgtctgatagattgactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  55783407 gtgtcgtctgatagattgactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaaagaggtaatgaagtgattttctatatttg 55783506  T
Q  101 ggacaagtttaagtatgggttcggagtacgtacctattacctcattaaccgtctcatacccttgttttaaaatcggataaaacttgaaccatacctaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55783507 ggacaagtttaagtatgggttcggagtacgtacctattacctcattaaccgtctcatacccttgttttaaaatcggataaaacttgaaccatacctaaat 55783606  T
Q  201 ccaatcaaagtagaaaaaaccaacaaatcgagtttggttcggacggatacccgtatggactctcctaccatgcctatctacattgcttcaatttcagcat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55783607 ccaatcaaagtagaaaaaaccaacaaatcgagtttggttcggacggatacccgtatggactctcctaccatgcctatctacattgcttcaatttcagcat 55783706  T
Q  301 aaatatgaactcataatgctttcaatgaataaattgcatcacaaatt 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  55783707 aaatatgaactcataatgctttcaatgaataaattgcatcacaaatt 55783753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 55847589 - 55847931
Alignment:
Q  1 gtgtcgtctgatagattgactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  55847589 gtgtcgtctgatagattgactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaaagaggtaatgaagtgattttctatatttg 55847688  T
Q  101 ggacaagtttaagtatgggttcggagtacgtacctattacctcattaaccgtctcatacccttgttttaaaatcggataaaacttgaaccatacctaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55847689 ggacaagtttaagtatgggttcggagtacgtacctattacctcattaaccgtctcatacccttgttttaaaatcggataaaacttgaaccatacctaaat 55847788  T
Q  201 ccaatcaaagtagaaaaaaccaacaaatcgagtttggttcggacggatacccgtatggactctcctaccatgcctatctacattgcttcaatttcagcat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  55847789 ccaatcaaagtagaaaaaaccaacaaatcgagtttggttcggacggatgcccggatggactctcctaccatgcctatctacattgcttcaatttcagcat 55847888  T
Q  301 aaatatgaactcataatgctttcaatgaataaattgcatcaca 343  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  55847889 aaatatgaactcataatgctttcaatgaataaattgcatcaca 55847931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 21714135 - 21714051
Alignment:
Q  33 agtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatg 117  Q
    |||||||||||||||| |||||||||||||| ||||||| |||||||| || | |||||||| ||||| ||| |||||| |||||    
T  21714135 agtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttctacatttgagacgagtttaggtatg 21714051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 182
Target Start/End: Original strand, 36306720 - 36306869
Alignment:
Q  33 agtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatgggttcggagtacgta 132  Q
    |||||||||||||| |||||   |||||||| ||||||| | |||||| || |||||||||| ||| |||||  |||| ||| | | |||||  || |||    
T  36306720 agtgaaatgatttatgatttcgatttctatttatataaaaggggtaataaattgattttctacattcgggacgggtttgagtgtagcttcgggttaggta 36306819  T
Q  133 cctattacctcattaaccgtctcatacccttgttttaaaatcggataaaa 182  Q
    |||||  || | ||||||||||||||||| |||||| |||||||| ||||    
T  36306820 cctatatccccgttaaccgtctcatacccgtgttttgaaatcggagaaaa 36306869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 42907807 - 42907925
Alignment:
Q  18 gactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatg 117  Q
    |||||||||| |  ||||||||||||||||| |||||||||||||| ||||||| || ||| | || |||||||||| ||| ||||| |||||  |||||    
T  42907807 gactctaactgtatgagtgaaatgatttagggtttgagtttctatttatataaaaga-gtagtaaattgattttctacattcgggacgagtttgggtatg 42907905  T
Q  118 ggttcggagtacgtacctat 137  Q
    || |||| ||  ||||||||    
T  42907906 ggctcggggtgggtacctat 42907925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 30034593 - 30034667
Alignment:
Q  17 tgactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgatttt 91  Q
    ||||||| |||||  ||||||||||||||||| |||| ||||||||| |||||||||||||| | || |||||||    
T  30034593 tgactctcactttatgagtgaaatgatttagggtttgggtttctatttatataaatgaggtagtaaattgatttt 30034667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 36919057 - 36919119
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttcta 94  Q
    ||||||||||||||||  |||||||||||||| ||||||| | |||||| || ||||||||||    
T  36919057 gagtgaaatgatttagagtttgagtttctatttatataaaagtggtaataaactgattttcta 36919119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 9281044 - 9280945
Alignment:
Q  38 aatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatgggttcggagtacgtacctat 137  Q
    ||||||||||| ||||| |||||||  ||||||| | | |||| || | ||||||||||||  |||||||||| |||||| |||||| ||  ||||||||    
T  9281044 aatgatttagggtttgaatttctatctatataaaagggataataaatttattttctatattcaggacaagtttgagtatgagttcggggtgggtacctat 9280945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 8843965 - 8843903
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttcta 94  Q
    ||||||||||||||||||||| |||||||||| |||| || | |||||| || | ||||||||    
T  8843965 gagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttcta 8843903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 8856929 - 8856867
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttcta 94  Q
    ||||||||||||||||||||| |||||||||| |||| || | |||||| || | ||||||||    
T  8856929 gagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttcta 8856867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 7334358 - 7334268
Alignment:
Q  18 gactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagttt 110  Q
    |||| ||||| || ||||||||||||||||  |||||||||||||| ||| ||| ||  |||| || |||||||| | ||||||||| |||||    
T  7334358 gactttaactgtgtgagtgaaatgatttagagtttgagtttctatttataaaaacga--taataaattgattttcaacatttgggacgagttt 7334268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 37384207 - 37384295
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatgggtt 121  Q
    ||||||||||||||||| |||||  ||||||| ||||||| | | |||| || ||| ||||||||||||||||  ||||  |||||||||    
T  37384207 gagtgaaatgatttagggtttgaacttctatttatataaaagggataataaattga-tttctatatttgggacgggtttgtgtatgggtt 37384295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 16575046 - 16575082
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatat 68  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  16575046 gagtgaaatgatttatgatttgagtttctatttatat 16575082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 17113177 - 17113102
Alignment:
Q  18 gactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttcta 94  Q
    |||||| |||||| ||||||||||||||| |||||| |||| |||| |||| || || ||||| || ||||||||||    
T  17113177 gactctgactttgggagtgaaatgatttaagatttgggtttttatttatatgaaaga-gtaataaattgattttcta 17113102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 33516233 - 33516185
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaat 80  Q
    ||||||||||||||||| ||||||||| |||| ||||||| | ||||||    
T  33516233 gagtgaaatgatttagggtttgagtttttatttatataaaaggggtaat 33516185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 29918521 - 29918607
Alignment:
Q  18 gactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggac 104  Q
    |||||||||| || ||||||||||||||||| |||||||||||||| ||||||| |||||||| || ||||||| || |||||||||    
T  29918521 gactctaactgtgtgagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattgattttttacatttgggac 29918607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 5793513 - 5793598
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatg 117  Q
    ||||||||||||||||| |||||||||||||| |||||||   | |||| || ||||||| || |||| |||| ||||| ||||||    
T  5793513 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttaggacgagtttgagtatg 5793598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 8545509 - 8545417
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatgggttcgg 124  Q
    ||||||||||||||||| ||||  ||||| || ||||||| |  ||  | || |||||||||| ||||||||| ||||| |||||||||||||    
T  8545509 gagtgaaatgatttagggtttggatttctgtttatataaaaggagttgtaaattgattttctacatttgggacgagtttgagtatgggttcgg 8545417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 28345419 - 28345511
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatgggttcgg 124  Q
    |||||||||||||||| ||||  ||||||||| ||||||| | ||||||  | | |||||||| |||  ||||||||||  ||||||||||||    
T  28345419 gagtgaaatgatttagaatttcggtttctatttatataaaaggggtaatatatttattttctacattcaggacaagtttgggtatgggttcgg 28345511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 6388679 - 6388603
Alignment:
Q  18 gactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttcta 94  Q
    |||||||| | || ||||||||||||||||| |||| |||||| || |||||||   |||||| || ||||||||||    
T  6388679 gactctaattgtgtgagtgaaatgatttagggtttgggtttctgtttatataaaatgggtaataaattgattttcta 6388603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 36274971 - 36275062
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatgggttcgg 124  Q
    ||||||||||||||||| || | ||||||||| ||||||| | | || | || ||||||| || ||| |||||| ||||| ||||||||||||    
T  36274971 gagtgaaatgatttagggttgg-gtttctatttatataaaagggatagtaaattgattttttacattcgggacatgtttaggtatgggttcgg 36275062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 9402503 - 9402609
Alignment:
Q  18 gactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatg 117  Q
    |||||| ||| || ||||||||||||||||| |||| ||||||||| ||||||||| |||| | || |||||||||| ||| | |||| |||| ||||||    
T  9402503 gactctgactgtgtgagtgaaatgatttagggtttgggtttctatttatataaatggggtactaaattgattttctacattcgagacaggtttgagtatg 9402602  T
Q  118 ggttcgg 124  Q
    |||||||    
T  9402603 ggttcgg 9402609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 14321795 - 14321857
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttcta 94  Q
    ||||||||||||||| |||||||||||||||| |||||||  ||||||| || | ||||||||    
T  14321795 gagtgaaatgatttaagatttgagtttctatttatataaaataggtaataaattaattttcta 14321857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 34179164 - 34179108
Alignment:
Q  37 aaatgatttaggatttgagtttctattcatat-aaatgaggtaatgaagtgattttc 92  Q
    |||||||||||| |||||||||||||| |||| ||| |||||||| || ||||||||    
T  34179164 aaatgatttagggtttgagtttctatttatataaaaagaggtaataaattgattttc 34179108  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 34346188 - 34346136
Alignment:
Q  18 gactctaactttgagagtgaaatgatttaggatttgagtttctattcatataa 70  Q
    |||||| ||| || ||||||||||||||||| |||| ||||||||| ||||||    
T  34346188 gactctgactgtgtgagtgaaatgatttagggtttgggtttctatttatataa 34346136  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 39219191 - 39219279
Alignment:
Q  36 gaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatgggttcgg 124  Q
    ||||||||||||| |||||||||||||| ||||||| |||||||| || | |||||||| |||| | || |||||  ||||||||||||    
T  39219191 gaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttctacatttagaacgagtttgggtatgggttcgg 39219279  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 174
Target Start/End: Complemental strand, 48125841 - 48125701
Alignment:
Q  34 gtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatgggttcggagtacgtac 133  Q
    ||||||| ||||||  |||||||||||||| ||||||| | |||| | || |||||||||| ||| | ||| |||||  |||||||||||| ||   |||    
T  48125841 gtgaaataatttagagtttgagtttctatttatataaaagcggtagtaaattgattttctacattcgcgacgagtttgggtatgggttcggggtggatac 48125742  T
Q  134 ctattacctcattaaccgtctcatacccttgttttaaaatc 174  Q
    ||||  |||| ||| ||||| | ||||| ||||||||||||    
T  48125741 ctatatcctcgttacccgtcccgtacccgtgttttaaaatc 48125701  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 47645019 - 47644980
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaa 71  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  47645019 gagtgaaatgatttaggatctgagtttctatttatataaa 47644980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 8880363 - 8880425
Alignment:
Q  18 gactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaatgaggtaat 80  Q
    ||||||||||||| |||||||||||||||   |||||||||||||| ||| ||| | ||||||    
T  8880363 gactctaactttgtgagtgaaatgatttaaagtttgagtttctatttataaaaaaggggtaat 8880425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 33293675 - 33293590
Alignment:
Q  37 aaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatgggttc 122  Q
    |||||||||||| |||||||||||||| |||||||   |||| | || |||||||||| ||| || || |||||  ||||||||||    
T  33293675 aaatgatttagggtttgagtttctattgatataaaatgggtactaaattgattttctacattcggaacgagtttgggtatgggttc 33293590  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 176
Target Start/End: Original strand, 3157016 - 3157160
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatgggttcggagtacgt 131  Q
    |||||||| ||||||||||||| ||||||||| |||||   | |||||| || ||||||||||| ||||||||  ||||  |||| ||||||| ||  ||    
T  3157016 gagtgaaaggatttaggatttgggtttctatttatatagtaggggtaataaattgattttctatgtttgggacgggtttgggtataggttcggtgtgggt 3157115  T
Q  132 acctattacctcattaaccgtctcatacccttgttttaaaatcgg 176  Q
    ||||||  || | ||| ||||| ||||||| | |||| |||||||    
T  3157116 acctatatccccgttatccgtcccatacccatattttgaaatcgg 3157160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 176
Target Start/End: Original strand, 25210306 - 25210450
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatgggttcggagtacgt 131  Q
    ||||||||||||||||| |||||||||||||| |||||||   |||||  || |||||||||| ||| ||||   ||||  ||||||||| || ||  ||    
T  25210306 gagtgaaatgatttagggtttgagtttctatttatataaaatgggtaacaaattgattttctacattcgggaggggttttggtatgggtttggggtgggt 25210405  T
Q  132 acctattacctcattaaccgtctcatacccttgttttaaaatcgg 176  Q
    || |||  |||| ||| ||||| ||||||| ||||||||| ||||    
T  25210406 acatatatcctcgttacccgtcccatacccgtgttttaaagtcgg 25210450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 13531878 - 13531970
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatgggttcgg 124  Q
    ||||||||||||||||| |||||||||||||| |||||||   | |||| || |||||||||| || |||| |  |||| ||| |||||||||    
T  13531878 gagtgaaatgatttagggtttgagtttctatttatataaaatggataataaattgattttctacatgtggggcgggtttgagtgtgggttcgg 13531970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 45256802 - 45256896
Alignment:
Q  82 aagtgattttctatatttgggacaagtttaagtatgggttcggagtacgtacctat-tacctcattaaccgtctcatacccttgttttaaaatcgg 176  Q
    |||| ||||| || |||||||||  ||||| |||||||||||| ||  |||| ||| |||| ||||||||||||||||||| |||||| |||||||    
T  45256802 aagtaattttttacatttgggacgggtttaggtatgggttcggggtgggtacttatatacc-cattaaccgtctcatacccgtgttttgaaatcgg 45256896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 13954674 - 13954736
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttcta 94  Q
    ||||||||||||||||| || ||||||||||| ||||||| | |||||| |  ||||||||||    
T  13954674 gagtgaaatgatttagggttcgagtttctatttatataaaagtggtaataagttgattttcta 13954736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 14095881 - 14095943
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttcta 94  Q
    ||||||||||||||||| || ||||||||||| ||||||| | |||||| |  ||||||||||    
T  14095881 gagtgaaatgatttagggttcgagtttctatttatataaaagtggtaataagttgattttcta 14095943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 40359259 - 40359341
Alignment:
Q  18 gactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttg 100  Q
    ||||||||||  | || |||||||||||||  |||||||||||||| ||||||| || ||||| || ||||||| || |||||    
T  40359259 gactctaactgcgtgactgaaatgatttagactttgagtttctatttatataaaagatgtaataaattgattttttacatttg 40359341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 31600942 - 31600889
Alignment:
Q  18 gactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaa 71  Q
    |||||||||| |  ||||||||||||||||  |||||||||||||| |||||||    
T  31600942 gactctaactgtatgagtgaaatgatttagagtttgagtttctatttatataaa 31600889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 772953 - 772881
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggaca 105  Q
    ||||||||||||| | | |||||||||||||| ||| ||| | |||||| || |||||||||||||||||||||    
T  772953 gagtgaaatgattcaaggtttgagtttctatttatacaaaag-ggtaataaattgattttctatatttgggaca 772881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 27252482 - 27252534
Alignment:
Q  19 actctaactttgagagtgaaatgatttaggatttgagtttctattcatataaa 71  Q
    ||||||||| || ||||||||||||||| |||||  ||||||||| |||||||    
T  27252482 actctaactgtgtgagtgaaatgatttatgattttggtttctatttatataaa 27252534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 53631882 - 53631973
Alignment:
Q  82 aagtgattttctatatttgggacaagtttaagtatgggttcggagtacgtacctat-tacctcattaaccgtctcatacccttgttttaaaat 173  Q
    |||| |||||||| ||| ||||| ||||| ||||||||||||| ||  |||||||| |||| | ||| ||||||||||| | |||||||||||    
T  53631882 aagtaattttctagattcgggacgagtttgagtatgggttcggggtgggtacctatatacc-cgttacccgtctcatacacgtgttttaaaat 53631973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 40187850 - 40187739
Alignment:
Q  1 gtgtcgtctgatagattga--ctctaactttgagagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatt 98  Q
    ||||| ||||| |||||||  |||| ||| || |||| ||||||||||||||||   || ||||| ||||||| |||||||| || | ||||||||||||    
T  40187850 gtgtcatctgaaagattgaaactctgactatgtgagtaaaatgatttaggattttcattactatttatataaaagaggtaataaattaattttctatatt 40187751  T
Q  99 tgggacaagttt 110  Q
     ||||| |||||    
T  40187750 cgggacgagttt 40187739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 7350582 - 7350476
Alignment:
Q  18 gactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatg 117  Q
    |||||||||| || |||| |||||||||||| |||   || ||||| ||||||| | | |||| || | |||||||| ||||| |||  |||||||||||    
T  7350582 gactctaactatgtgagtaaaatgatttagggtttcgattactatttatataaaagcgataataaattaattttctacatttgagacgggtttaagtatg 7350483  T
Q  118 ggttcgg 124  Q
    |||||||    
T  7350482 ggttcgg 7350476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 176
Target Start/End: Complemental strand, 27900559 - 27900418
Alignment:
Q  35 tgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatgggttcggagtacgtacc 134  Q
    |||||||||||||| ||| |||||||||| ||||||| |||| ||| || ||||||| || ||| ||| |   |||  |||||||||||   |  |||||    
T  27900559 tgaaatgatttagggtttcagtttctatttatataaaagaggaaataaattgattttatacattcggggcggatttgggtatgggttcgagatgggtacc 27900460  T
Q  135 tattacctcattaaccgtctcatacccttgttttaaaatcgg 176  Q
    |||  || ||||| ||||| ||||||| |||||| |||||||    
T  27900459 tatatccacattacccgtcccatacccatgttttgaaatcgg 27900418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 16311453 - 16311302
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaatgaggtaatgaagtgattttctatatttgggacaagtttaagtatgggttcggagtacgt 131  Q
    |||| |||||||||||| |||| ||||||||| ||||||| | | |||| || |||||||| | ||| | |||| |||| | ||||||||||| ||  ||    
T  16311453 gagtaaaatgatttagggtttg-gtttctatttatataaaagggataataaattgattttcaacattcgagacaggtttgaatatgggttcggggtgggt 16311355  T
Q  132 acctattacctcattaaccgtctcatacccttgttttaaaatcggataaaact 184  Q
    ||||||  ||   ||| ||||||| ||| | |||||| |||||||| ||||||    
T  16311354 acctatatccctgttatccgtctcgtactcgtgttttgaaatcggaaaaaact 16311302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1322 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 1039 - 1078
Alignment:
Q  32 gagtgaaatgatttaggatttgagtttctattcatataaa 71  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  1039 gagtgaaatgatttaagatttgagtttctatttatataaa 1078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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