View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19776_low_30 (Length: 360)
Name: NF19776_low_30
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 118 - 352
Target Start/End: Complemental strand, 5985336 - 5985102
Alignment:
| Q |
118 |
gtcgatacgaatccaacaatatcttgcatgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacatgatc |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5985336 |
gtcgatacgaattcaacaatatcttgcatgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacataatc |
5985237 |
T |
|
| Q |
218 |
gacatttaattttcggaagggagtacttttataaggagcctacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5985236 |
gacatttaattttcggaagggagtacttttataaggagcggacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgt |
5985137 |
T |
|
| Q |
318 |
tgaattcaccacctcagtgcactcacaggttctgc |
352 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
5985136 |
tgaattcaccacctcagtgcactcacagtttctgc |
5985102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 258 - 345
Target Start/End: Complemental strand, 5961013 - 5960926
Alignment:
| Q |
258 |
tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcagtgcactcacag |
345 |
Q |
| |
|
||||||| ||| | ||||||| || |||||||||||||||||||| ||||| |||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
5961013 |
taccttttatcaagtttccaaaaacctttatattgggccaccattgtacagtttccgcattgaagtcaccacctcagtgcactcacag |
5960926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5985453 - 5985408
Alignment:
| Q |
1 |
attccaaaataaatgattttcttgaccattgcacacatgtcaatac |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5985453 |
attccaaaataaatgattttcttgaccattgcacacatgtcaatac |
5985408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 350
Target Start/End: Complemental strand, 5949661 - 5949569
Alignment:
| Q |
258 |
tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcagtgcactcacaggttct |
350 |
Q |
| |
|
||||||| ||| ||||||||| || |||||||||||||||||||| |||| |||||| |||| |||||||||| |||| |||||||| |||| |
|
|
| T |
5949661 |
taccttttatcaattttccaaaaacctttatattgggccaccattgtacaatttccacattgagttcaccaccttagtgtactcacagtttct |
5949569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 352
Target Start/End: Complemental strand, 5921783 - 5921684
Alignment:
| Q |
258 |
tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttg-----aattcaccacctcagtgcactcacaggttctgc |
352 |
Q |
| |
|
||||||| |||| || ||||| || |||||||||||||||||||| |||||||| | ||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
5921783 |
taccttttatctcttctccaaaaacctttatattgggccaccattgtacagcttacgcgttgaaattaaatcaccacctcagtgcactcacagtttctgc |
5921684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 19533961 - 19534044
Alignment:
| Q |
127 |
aatccaacaatatcttgcatgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgca |
210 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| ||| | |||||| || || |||||||||||||| | ||||||||| |
|
|
| T |
19533961 |
aatccaacaatatcttatatgccacaatttgtctttgtatattagtagaaaaatattgtcaaagtatgttatatgaataatgca |
19534044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 30080693 - 30080761
Alignment:
| Q |
145 |
atgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacat |
213 |
Q |
| |
|
|||||||||||| |||||| || | |||||| || ||||||||||||||||| || |||| ||||||| |
|
|
| T |
30080693 |
atgctacaatttatctttagatattagtagaaaaatatgatcaaagtatgttacgtgaatagtgcacat |
30080761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University