View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_33 (Length: 345)
Name: NF19776_low_33
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_33 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 21181995 - 21181651
Alignment:
| Q |
1 |
tggtcagaggaatctaagcgttgggtttctctacaatcatccaagtgcggaacaaacaattcttgtggaattttttccatttgtaattcgcaagatcgtg |
100 |
Q |
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| T |
21181995 |
tggtcagaggaatctaagcgttgggtttctctacaatcatccaagtgcggaacaaacaattcttgtggaattttttccatttgtaattcgcaagatcgcg |
21181896 |
T |
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| Q |
101 |
acccttgtcactgtctcaatggttttgaaccgtttgatgctgattcttggagaaaggggaataggtcagctggatgtgtcaggataaacgaattatcctg |
200 |
Q |
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| T |
21181895 |
acccttgtcactgtctcaatggttttgaaccgtttgatgctgattcttggagaaaggggaataggtcagctggatgtgtcaggataaacgaattatcctg |
21181796 |
T |
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| Q |
201 |
cagcagtaaaaatagcatagatggattcaaacgtttcagttcagttgaattacctccatacgaagtgaacctacagttcgatgcgctctcccagtgtaac |
300 |
Q |
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| T |
21181795 |
caacagtaaaaatagcatagatggattcaaacgtttcagtttagttgaattacctccatatgaagtgaacctacagttcgatgcgctctcacagtgtaac |
21181696 |
T |
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| Q |
301 |
aacacttgttacaccaattgttcttgtgttgcttatgcttatgat |
345 |
Q |
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| T |
21181695 |
aacacttgttacaccaattgttcttgtgttgcttatgcttatgat |
21181651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 23177981 - 23178092
Alignment:
| Q |
7 |
gaggaatctaagcgttgggtttctctacaatcatccaagtgcggaacaaacaattcttgtggaattttttccatttgtaattcgcaagatcgtgaccctt |
106 |
Q |
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| T |
23177981 |
gaggaatctaagcaatggatttttctacggtcatcaacgtgtgtgacaaacaattcatgtggatttttttccatttgtaatccgcaaactcctgaccctt |
23178080 |
T |
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| Q |
107 |
gtcactgtctca |
118 |
Q |
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| T |
23178081 |
gtcaatgtctca |
23178092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 23187210 - 23187294
Alignment:
| Q |
104 |
cttgtcactgtctcaatggttttgaaccgtttgatgctgattcttggagaaaggggaataggtcagctggatgtgtcaggataaa |
188 |
Q |
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| T |
23187210 |
cttgtcaatgtctctacggtttcgaaaagtatgattccgattcttggagtaagggggataggtcagcgggatgtgtcagaataaa |
23187294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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