View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_41 (Length: 303)
Name: NF19776_low_41
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_41 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 30494727 - 30494441
Alignment:
| Q |
18 |
gtacatttgatcgagagttggtccttcaagaagggaaagattgttccgagcaaaatagcttcctttctccaataccaacactttataaccactttttgcg |
117 |
Q |
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| T |
30494727 |
gtacatttgatcgagggttggtccttcaagaagggaaagattgttccgagcaaaatagcttcctttctccaataccaacactttataaccactttttgct |
30494628 |
T |
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| Q |
118 |
agaactcccgctgccacgccacctcctgagccagaaccaacaaccactgcatcacattggataactagagaaggagatgagatggtagaagc-ttattcg |
216 |
Q |
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| T |
30494627 |
agaactcccgctaccacgccacctcctgagccagaaccaacaaccactgcatcacattggataactagagaaggagatgagatggtagaagctttattcg |
30494528 |
T |
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| Q |
217 |
ttagaggagtgaccgagacagggaatccaaatcgtcttagagaatctgaaatgatatcacgcgggtagttcagattgacaaggcctt |
303 |
Q |
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| T |
30494527 |
ttggaggagtgaccgagacagggaatccaaatcgtcttagagaatctgaaatgatatcacgcgggtagttcagattgacaaggcctt |
30494441 |
T |
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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 10450697 - 10450876
Alignment:
| Q |
18 |
gtacatttgatcgagagttggtccttcaagaagggaaagattgttccgagcaaaatagcttcctttctccaataccaacactttataaccactttttgcg |
117 |
Q |
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|||||||||||| | ||||||||||||||||| ||||||||||||| |||| |||||| |||||||||||| ||||||||||| ||||| || || |
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| T |
10450697 |
gtacatttgatccattgttggtccttcaagaagagaaagattgttcctagcagaatagcctcctttctccaaaaccaacactttgtaaccggcattcgcc |
10450796 |
T |
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| Q |
118 |
agaactcccgctgccacgccacctcctgagccagaaccaacaaccactgcatcacattggataactagagaaggagatga |
197 |
Q |
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|||| ||| ||| | || |||||||||||||| |||||||| ||||| || || ||||| | ||||| |||||||||||| |
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| T |
10450797 |
agaattccggctacaactccacctcctgagccggaaccaactaccacagcgtcgcattgtacaactaaagaaggagatga |
10450876 |
T |
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