View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_42 (Length: 298)
Name: NF19776_low_42
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 18741777 - 18742054
Alignment:
| Q |
16 |
atgttatagcgtgtgccatgaaaccataaatctttgtatctcctacaagcactagaccccacccttaccctaaaccccaactcgataacaatacaatcct |
115 |
Q |
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| T |
18741777 |
atgttacagcgtgtgccatgaaaccagaaatctttgtatctcctacaagcactagaccccacccctaccctaaaccccaactcgaaaacaatacaatcct |
18741876 |
T |
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| Q |
116 |
ctgagctcaccttcaatatccatacagaaatagaaaatttataaaatgcaaaatacaaagcgagtaggagagtgtattggtttcccataaggaaacaaca |
215 |
Q |
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| T |
18741877 |
ccgagctcaccttcaatatccatacagaaatagaaaatttataaaatgtaaaatacaaagcgagcaagagagtgtattggtttcccataaggaaacaaca |
18741976 |
T |
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| Q |
216 |
ctaaaagctaattattttcacc----------caggggggttcctcatcctttttcctcccctcaactccctaacact |
283 |
Q |
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||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18741977 |
ctaaaagctaattatttccacctgggggggggggggggggttcctcatcccttttcctcccctcaactccctaacact |
18742054 |
T |
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