View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19776_low_47 (Length: 265)
Name: NF19776_low_47
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_47 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 18741797 - 18741548
Alignment:
| Q |
1 |
tcatggcacacgctataacattttgttggtcttgttatggggcctctcaatgtgacaatagtcctttggctctatattttaatttttgggttagtagata |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18741797 |
tcatggcacacgctgtaacattttgttggtcttgttatggggcctcccaatgtgacaat---cctttggctctatattttaatttttgggttagtagata |
18741701 |
T |
|
| Q |
101 |
tttgaaagaggagtataagagagatagaatgtttgtgcttcctggtcatctaggttctgtattcattactcacttgatttcttatggtgattttgtctgt |
200 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18741700 |
tttgaaagaggaatctaagagagatagaatgtttgcgcttcctggtcatctaggttctttattcattactcacttgatttcttatggtgattttgtctat |
18741601 |
T |
|
| Q |
201 |
atgtattatttaatgtgtagttagtgtaaaatagaattatgtgttgttcatat |
253 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
18741600 |
atgtattatttaatgtatagtcagtgtaaaatagagttatgtgttgttcatat |
18741548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University