View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_48 (Length: 264)
Name: NF19776_low_48
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 41217513 - 41217252
Alignment:
| Q |
1 |
ggagagagggagttgattatgtgtttgaatccttatatcaa--gnnnnnnnngatgttatagtcatgagacgtgttatgttggatgtgatggcgatacaa |
98 |
Q |
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| T |
41217513 |
ggagagagggagttgattatgtgtttgaatccttatatcaaaagttttttttgatgttatagtcatgagacgtgttatgttggatgtgatggcgatacaa |
41217414 |
T |
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| Q |
99 |
tctcacgttgactatgaatgagtcaaatgttggatatataagagatgtgattcatatgtggaatatagattttaggttgacatatagtttcaaatttccc |
198 |
Q |
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| T |
41217413 |
tcttacgttgactatgaatgagtcaaatgttggatatataagagatgtgattcatatgtggaatatagattttaggttgacatatagtttcaaatttccc |
41217314 |
T |
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| Q |
199 |
ttgtgtggttgctctcggttgtaatgtcaatgtgatggtcctggggtgtttctgtgctcctc |
260 |
Q |
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| T |
41217313 |
ttgtgtggttgctctcggttgtaatgtcaatgtgatggtcctagggtgttttagtgctcctc |
41217252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 1418100 - 1418055
Alignment:
| Q |
110 |
ctatgaatgagtcaaatgttggatatataagagatgtgattcatat |
155 |
Q |
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| T |
1418100 |
ctatgaatgagtaaaatattggatatataagatatttgattcatat |
1418055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 21488893 - 21488856
Alignment:
| Q |
111 |
tatgaatgagtcaaatgttggatatataagagatgtga |
148 |
Q |
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| T |
21488893 |
tatgaatgagtaaaatgttggatatataagagatgtga |
21488856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 11199942 - 11199999
Alignment:
| Q |
99 |
tctcacgttgactatgaatgagtcaaatgttggatatataagagatgtgattcatatg |
156 |
Q |
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|||||| ||| |||||||| || ||||||||||||||||||||| |||| ||||||| |
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| T |
11199942 |
tctcacattgcctatgaataggtaaaatgttggatatataagagaggtgactcatatg |
11199999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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