View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_5 (Length: 688)
Name: NF19776_low_5
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 10 - 601
Target Start/End: Original strand, 9934807 - 9935413
Alignment:
| Q |
10 |
aagaatatgtgttaccatctccattcattcaactctgcacacttgccagtactatgagtcatactcaataaggagtttgagaagcatccacataactcta |
109 |
Q |
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| T |
9934807 |
aagaaaatgtgttaccatctccattcattcaactctgcacacttgccagtactatgagtcatactcaataaggagtttgagaagcatccacataactcta |
9934906 |
T |
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| Q |
110 |
acgaaataaatatgtgacaaccaatacctcttgacactatat--gtacactcaatttcttaaaattaacgtagtatttctctcgttaaggatcattgttg |
207 |
Q |
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| T |
9934907 |
ccgaaataaatatgtgacaaccaatacctcttgacactatatatgtaccctcaatttcttaaaattaacgtagtatttctctcgttaaggatcattgttg |
9935006 |
T |
|
| Q |
208 |
attgatgtgagatgagcaactcaattaaattatgtaatttgttggaaagcttgagggagcataagagtgtcaagactaaagatatgaacccctaaaatat |
307 |
Q |
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| T |
9935007 |
attgatgtgagatgagcaactcaattaaattatgtaatttgttggaaagcttgagggagcataagagtatcaagacaaaagatatgaacccctaaaatat |
9935106 |
T |
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| Q |
308 |
ttggccaatacatctttattcaaaactttgagttgaa--------------aacttatacatattccatttaattttatatgatgttaataactcacgtc |
393 |
Q |
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| T |
9935107 |
ttggacaatacatctttattcaaaactttgagttgaaaatacaaattaactaacttatacatattccatttaattttatatgatgttaataactcacgtc |
9935206 |
T |
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| Q |
394 |
aatttcaactattaattaaagatggnnnnnnnnntgtgatttgtttagtataaatcgagttgagttatgcattatatatgtagaccaacaatgttgtgta |
493 |
Q |
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| T |
9935207 |
aatttcaactattaat---agatgg--aaaaaaatgtgatttgtttagtataaatctagttgagttatgcat----tatgtagaccaacaatgttatgta |
9935297 |
T |
|
| Q |
494 |
ctttgttttagagaaattgaaacagcgagtcatttgtta--------cccaaagacgagaactaatatgagagcgtatatttggtggtgttggtttagac |
585 |
Q |
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| T |
9935298 |
ctttgttttagagaaattgaaacagcgagtcatttattaccaagctgcccaaaaacgagaactaatatgagagcgtatatttggtggtgttggtctggac |
9935397 |
T |
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| Q |
586 |
cttgcagttttctcct |
601 |
Q |
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||| |||||||||||| |
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| T |
9935398 |
cttacagttttctcct |
9935413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 604 - 688
Target Start/End: Original strand, 9936261 - 9936345
Alignment:
| Q |
604 |
ttaaggttttagtttcaattatctttagtgtcaattcagatgagctaatttagcttattcaaaaaatatgagagtgtatatttaa |
688 |
Q |
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| T |
9936261 |
ttaaggttttaatttcaattatctttagtgtcaattcagatgagctaatttagcttattcaaaaaatatgagagtatatatttaa |
9936345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 669
Target Start/End: Complemental strand, 2265719 - 2265678
Alignment:
| Q |
628 |
ttagtgtcaattcagatgagctaatttagcttattcaaaaaa |
669 |
Q |
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| T |
2265719 |
ttagtgtcaatttagttgagctaatttagcttattcaaaaaa |
2265678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 625 - 669
Target Start/End: Complemental strand, 52769982 - 52769938
Alignment:
| Q |
625 |
tctttagtgtcaattcagatgagctaatttagcttattcaaaaaa |
669 |
Q |
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| T |
52769982 |
tctttagtgtcaatttaggtgggctaatttagcttcttcaaaaaa |
52769938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 479 - 531
Target Start/End: Complemental strand, 4787199 - 4787147
Alignment:
| Q |
479 |
caacaatgttgtgtactttgttttagagaaattgaaacagcgagtcatttgtt |
531 |
Q |
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| T |
4787199 |
caacaatgttgagtattttgttttaatgaaattgaaaccgcaagtcatttgtt |
4787147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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