View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19776_low_52 (Length: 250)

Name: NF19776_low_52
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19776_low_52
NF19776_low_52
[»] chr4 (3 HSPs)
chr4 (13-250)||(29550840-29551076)
chr4 (193-250)||(28279774-28279831)
chr4 (197-250)||(44633097-44633150)
[»] chr2 (4 HSPs)
chr2 (159-250)||(24356014-24356105)
chr2 (193-250)||(6685782-6685839)
chr2 (209-250)||(7931609-7931650)
chr2 (193-250)||(43182211-43182268)
[»] chr8 (5 HSPs)
chr8 (166-250)||(32678945-32679029)
chr8 (159-244)||(28791210-28791296)
chr8 (205-249)||(29638250-29638294)
chr8 (193-242)||(14117399-14117448)
chr8 (193-250)||(40077863-40077920)
[»] chr5 (2 HSPs)
chr5 (159-250)||(16954578-16954669)
chr5 (160-250)||(10044573-10044663)
[»] chr7 (5 HSPs)
chr7 (193-250)||(30659593-30659650)
chr7 (165-234)||(45218254-45218323)
chr7 (205-250)||(2849204-2849249)
chr7 (193-242)||(18731379-18731428)
chr7 (193-225)||(24288358-24288390)
[»] chr1 (7 HSPs)
chr1 (193-250)||(16451568-16451625)
chr1 (193-250)||(16460721-16460778)
chr1 (205-242)||(7075524-7075561)
chr1 (193-250)||(26040577-26040634)
chr1 (193-250)||(45048969-45049026)
chr1 (193-250)||(50333872-50333929)
chr1 (205-250)||(52382501-52382546)
[»] chr6 (2 HSPs)
chr6 (193-250)||(3166221-3166278)
chr6 (193-250)||(8232423-8232480)
[»] scaffold0685 (1 HSPs)
scaffold0685 (205-250)||(6514-6559)
[»] chr3 (1 HSPs)
chr3 (205-250)||(48409533-48409578)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 29551076 - 29550840
Alignment:
Q  13 aatatacgaaatctgggcattacataaattcggattatacaatctaaaaatacctacaacctctttcgaattatataaaaccgaatgtattttgagaaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  29551076 aatatacgaaatctgggcattacataaattcggattatacaatctaaaaatacctgcaacctctttcgaattatataaaatcgaatgtattttgagaaaa 29550977  T
Q  113 ttgggcgcgtgcgaaatccacattgtaggaaaagtaatacttcatcccgtctcagtttaactgacccatttgtnnnnnnntattgtcccaataatcttga 212  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||        ||||||||||| ||||||||    
T  29550976 ttgggcgcgtgcgaaatccacatggtaggaaaagtaatacttcat-ccgtctcagtttaactaacccatttgcaaaaaaatattgtcccaagaatcttga 29550878  T
Q  213 cccatttcactttaaaatacaacattaattaccttttt 250  Q
    |||||||||||||  |||||||||||||||||||||||    
T  29550877 cccatttcacttttcaatacaacattaattaccttttt 29550840  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 28279774 - 28279831
Alignment:
Q  193 tattgtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||||||||| ||||||||| |||||||||||  ||||||||||||||||| |||||    
T  28279774 tattgtcccaagaatcttgactcatttcacttttcaatacaacattaattactttttt 28279831  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 44633097 - 44633150
Alignment:
Q  197 gtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||||| ||||||||| |||||||||||  ||||||||||||||||| |||||    
T  44633097 gtcccaagaatcttgactcatttcacttttcaatacaacattaattactttttt 44633150  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 24356014 - 24356105
Alignment:
Q  159 ccgtctcagtttaactgacccatttgtnnnnnnntattgtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||| |||||||||||||||||||||       ||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||    
T  24356014 ccgtcccagtttaactgacccatttgtaaaaaaatattgtcccaagaatcttgacccatttcacttttcaatacaacattaattactttttt 24356105  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 6685839 - 6685782
Alignment:
Q  193 tattgtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||||||||| |||||||||||||||||| ||  ||||||| ||||||||| |||||    
T  6685839 tattgtcccaagaatcttgacccatttcacattctaatacaatattaattactttttt 6685782  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 7931650 - 7931609
Alignment:
Q  209 ttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    |||||||||||||||||  ||||||||||||||||| |||||    
T  7931650 ttgacccatttcacttttcaatacaacattaattactttttt 7931609  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 43182211 - 43182268
Alignment:
Q  193 tattgtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||| ||||| |||||||| |||||||| |||  ||||||||||||||||| |||||    
T  43182211 tattgacccaaaaatcttgatccatttcaattttcaatacaacattaattactttttt 43182268  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 32678945 - 32679029
Alignment:
Q  166 agtttaactgacccatttgtnnnnnnntattgtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||||||||||||||||||       ||||||| ||| |||||| ||||||||||||||  |||||||||||||||||||||||    
T  32678945 agtttaactgacccatttgtaaaaaaatattgtctcaaaaatcttcacccatttcacttttcaatacaacattaattaccttttt 32679029  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 28791210 - 28791296
Alignment:
Q  159 ccgtctcagtttaactgacccatttgtnnnnnnntattgtccc-aataatcttgacccatttcactttaaaatacaacattaattac 244  Q
    ||||| |||||||||||||||||||||       ||||||||| || |||||||||||||||||||||  ||| |||||||||||||    
T  28791210 ccgtcccagtttaactgacccatttgtaaaaaaatattgtccccaagaatcttgacccatttcacttttcaatgcaacattaattac 28791296  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 29638250 - 29638294
Alignment:
Q  205 aatcttgacccatttcactttaaaatacaacattaattacctttt 249  Q
    |||||||||||||||||||||  ||||||||||||||||||||||    
T  29638250 aatcttgacccatttcacttttcaatacaacattaattacctttt 29638294  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 14117399 - 14117448
Alignment:
Q  193 tattgtcccaataatcttgacccatttcactttaaaatacaacattaatt 242  Q
    ||||||||||| ||||||||| |||||||||||  |||||||||||||||    
T  14117399 tattgtcccaagaatcttgactcatttcacttttcaatacaacattaatt 14117448  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 40077920 - 40077863
Alignment:
Q  193 tattgtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||||| ||| ||||||||||||||||| |||   |||||||||||||||| |||||    
T  40077920 tattgtctcaaaaatcttgacccatttcagtttttgatacaacattaattactttttt 40077863  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 16954578 - 16954669
Alignment:
Q  159 ccgtctcagtttaactgacccatttgtnnnnnnntattgtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||||| ||||||||||| |||||||       |||||||| || |||||||| |||||||| |||| ||||||||||||||||| |||||    
T  16954578 ccgtctccgtttaactgactcatttgtaaaaaaatattgtcctaagaatcttgatccatttcattttacaatacaacattaattactttttt 16954669  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 10044573 - 10044663
Alignment:
Q  160 cgtctcagtttaactgacccatttgtnnnnnnntattgtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||||||||||| |||| |||||||       |||||| | |||||| |||| | ||||||||||  ||||||||||||||||| |||||    
T  10044573 cgtctcagtttaattgactcatttgtaaaaaaatattgttctaataattttgatcaatttcacttttcaatacaacattaattactttttt 10044663  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 30659650 - 30659593
Alignment:
Q  193 tattgtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    |||||||| || |||||||||||||||||||||  ||||||||||||||||| |||||    
T  30659650 tattgtcctaagaatcttgacccatttcacttttcaatacaacattaattactttttt 30659593  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 45218323 - 45218254
Alignment:
Q  165 cagtttaactgacccatttgtnnnnnnntattgtcccaataatcttgacccatttcactttaaaatacaa 234  Q
    |||||||||||||||||||||       ||||||| ||| |||||||||||||||||||||  |||||||    
T  45218323 cagtttaactgacccatttgtaaaaaaatattgtctcaagaatcttgacccatttcacttttcaatacaa 45218254  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 2849204 - 2849249
Alignment:
Q  205 aatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    |||||||| ||||||||||||  ||||||||||||||||| |||||    
T  2849204 aatcttgatccatttcacttttcaatacaacattaattactttttt 2849249  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 18731379 - 18731428
Alignment:
Q  193 tattgtcccaataatcttgacccatttcactttaaaatacaacattaatt 242  Q
    |||||||||| ||||||||| |||||||| |||  |||||||||||||||    
T  18731379 tattgtcccagtaatcttgatccatttcagtttccaatacaacattaatt 18731428  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 24288358 - 24288390
Alignment:
Q  193 tattgtcccaataatcttgacccatttcacttt 225  Q
    ||||||||||| |||||||||||||||||||||    
T  24288358 tattgtcccaagaatcttgacccatttcacttt 24288390  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 16451568 - 16451625
Alignment:
Q  193 tattgtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    |||||||| || |||||||||||||||||||||  ||||||||||||||||| |||||    
T  16451568 tattgtcctaagaatcttgacccatttcacttttcaatacaacattaattactttttt 16451625  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 16460721 - 16460778
Alignment:
Q  193 tattgtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    |||||||| || |||||||||||||||||||||  ||||||||||||||||| |||||    
T  16460721 tattgtcctaagaatcttgacccatttcacttttcaatacaacattaattactttttt 16460778  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 7075561 - 7075524
Alignment:
Q  205 aatcttgacccatttcactttaaaatacaacattaatt 242  Q
    |||||||||||||||||||||  |||||||||||||||    
T  7075561 aatcttgacccatttcacttttcaatacaacattaatt 7075524  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 26040577 - 26040634
Alignment:
Q  193 tattgtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||||||||| ||| |||||||||||||||||  ||||  ||||||||||| |||||    
T  26040577 tattgtcccaagaatattgacccatttcacttttcaatattacattaattactttttt 26040634  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 45048969 - 45049026
Alignment:
Q  193 tattgtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||||||||| ||| ||||| ||||||| |||  ||||||||||||||||| |||||    
T  45048969 tattgtcccaagaattttgactcatttcaattttcaatacaacattaattactttttt 45049026  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 50333872 - 50333929
Alignment:
Q  193 tattgtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||||| ||| |||||||| ||||||||||||  |||| |||||||||||| |||||    
T  50333872 tattgtcgcaagaatcttgatccatttcactttccaatataacattaattactttttt 50333929  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 52382546 - 52382501
Alignment:
Q  205 aatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||||||||||||||| |||  ||||||||||||||||| |||||    
T  52382546 aatcttgacccatttcaattttcaatacaacattaattactttttt 52382501  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 3166278 - 3166221
Alignment:
Q  193 tattgtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||||||||| |||||||| |||||||| |||  ||||||||||||||||| |||||    
T  3166278 tattgtcccaagaatcttgatccatttcaattttcaatacaacattaattactttttt 3166221  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 8232480 - 8232423
Alignment:
Q  193 tattgtcccaataatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||||| ||| |||||||| ||||||||||||  ||||||||||||||||| |||||    
T  8232480 tattgtctcaagaatcttgatccatttcacttttcaatacaacattaattactttttt 8232423  T

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Target: scaffold0685 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 6559 - 6514
Alignment:
Q  205 aatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||||||||||||||| |||  ||||||||||||||||| |||||    
T  6559 aatcttgacccatttcaattttcaatacaacattaattactttttt 6514  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 48409533 - 48409578
Alignment:
Q  205 aatcttgacccatttcactttaaaatacaacattaattaccttttt 250  Q
    ||||||||||||||||| |||  ||||||||||||||||| |||||    
T  48409533 aatcttgacccatttcagttttcaatacaacattaattactttttt 48409578  T

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