View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19776_low_55 (Length: 243)

Name: NF19776_low_55

Description: NF19776

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19776_low_55

[»] chr2 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 158; E-Value: 3e-84

Query Start/End: Original strand, 50 - 227

Target Start/End: Complemental strand, 8920834 - 8920657

Alignment:

Q	50	aatgattttgagtttgtcatttttgcataggaaattggaatatttctttcagcatattcttagagagggaaattaatgtgtcgaatggcttgcaaagacc	149	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	8920834	aatgattttgagtttgtcatttttgcataggaaattggaatatttctttcagcatattcttagagagggaaattaatgtgtcgaatggtttgcaaagact	8920735	T

Q	150	gaagcttcatccagcaatatcttaaaactttggaatagttgtcctcggcaattcagtatcgtgttgatgactgatatt	227	Q
		\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8920734	gaaacttcatccagcgatatcttacaactttggaatagttgtcctcggcaattcagtatcgtgttgatgactgatatt	8920657	T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 96 - 218

Target Start/End: Complemental strand, 34790310 - 34790188

Alignment:

Q	96	tttcagcatattcttagagagggaaattaatgtgtcgaatggcttgcaaagaccgaagcttcatccagcaatatcttaaaactttggaatagttgtcctc	195	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	34790310	tttcagcatactcttagataaggaaattaatgtgtcaattaacttgtaaagaccgaagcttcctcccatgataccttaaaattttggaatagttttccta	34790211	T

Q	196	ggcaattcagtatcgtgttgatg	218	Q
		\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|
T	34790210	tgcaactcagtctcgcgttgatg	34790188	T

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