View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_6 (Length: 663)
Name: NF19776_low_6
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 13 - 511
Target Start/End: Original strand, 10922027 - 10922529
Alignment:
| Q |
13 |
aatatgaacaacgcttgtaatttccaatattggtttagtttctataatatatctctacttagtttacgttcttttaagattgttttagtgcttatttcat |
112 |
Q |
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| T |
10922027 |
aatatgaacaacgcttataatttccaatattggtttagtttctataatatatctctacttagtttacttt-ttttaagattgttttagtgcttatttcat |
10922125 |
T |
|
| Q |
113 |
gttatcaaaattcaacctcaccgcctattggaggcaaaatttgtagatacatatcgtatttattg-----ttgtgaaaatcaagtctaaccacagattca |
207 |
Q |
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| T |
10922126 |
gttatcaaacttcaacctcaccgcctattggaggcaaaatttgtagatacatatcgtatttattgcagtgttgtgaaaatcaagtcgaaccacagattca |
10922225 |
T |
|
| Q |
208 |
attggtttaacaactatagtcgattttctatgtatactacctgtataatgtaccatcaccaatgcttatcattcacaaggtacgagtatatatacaaaat |
307 |
Q |
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| T |
10922226 |
attggtttaacaactatagtcgattttctatgtatactacctgtataatttaccatcaccaacgcttatcattcacaaggtacgagtatatatacaaaat |
10922325 |
T |
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| Q |
308 |
cagttgcagcaatatgattaacagcttaacaactttaaagtattgtcttagatattaggcatcaccaaattcaccaagaataaacaattaatttacaagc |
407 |
Q |
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| T |
10922326 |
cagttgcagcaatatgattaacggcttaacaactttaaagtattgtcttagatattaggcatcaccaaattcaccaagaataaacaattaatttacaagc |
10922425 |
T |
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| Q |
408 |
tgtctagcgtcgtgtgactggtttatttaatgaccatagtgcattgcatcaaaattcacgacttcatgttcgataaatgtataactcctctagcaattag |
507 |
Q |
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| T |
10922426 |
tgtctagcgtcgtgtgactggtttatttaatgaccatagtgcattgcatcaaaattcacgacttcatgttagataaatgtataactcctctagcaattag |
10922525 |
T |
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| Q |
508 |
actc |
511 |
Q |
| |
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|||| |
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| T |
10922526 |
actc |
10922529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 10950452 - 10950504
Alignment:
| Q |
17 |
tgaacaacgcttgtaatttccaatattggtttagtttctataatatatctcta |
69 |
Q |
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| T |
10950452 |
tgaacaacacttgttatttcgaatcttagtttagtttctattatatatctcta |
10950504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 10951102 - 10951130
Alignment:
| Q |
149 |
aaatttgtagatacatatcgtatttattg |
177 |
Q |
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| T |
10951102 |
aaatttgtagatacatatcgtatttattg |
10951130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 232 - 536
Target Start/End: Original strand, 45407119 - 45407428
Alignment:
| Q |
232 |
tttctatgtatactacctgtataatgtaccatcaccaatgcttatcattcacaaggtacgagtatatatacaaaatcagttgcagcaatatgattaacag |
331 |
Q |
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| T |
45407119 |
tttctatgtatactacatgtataatgtaccagtat-agcacctatcattcacaaggtacgattata--tacaaaatcagttgcagcaatatgattaatag |
45407215 |
T |
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| Q |
332 |
cttaacaactttaaagtattgtcttagatattaggcatcaccaaattcaccaagaataaacaattaatttacaagctgtctagcg-------tcgtgtga |
424 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||||||||||| |||||||||||||||| |||||||| |
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| T |
45407216 |
cttaacaactttaaagtattgtcttagatatcagccatcaccaaatacaccaataataaacaattaa--tacaagctgtctagcgtcgtgactcgtgtga |
45407313 |
T |
|
| Q |
425 |
ctggtttattta---atgaccatagtgcattgcatcaaaattcacgacttcatgttcgataaatgtataactcctctagcaattagactcaagtagttaa |
521 |
Q |
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|||||||||||| |||||||||||||| |||||||||||| | |||||| |||| ||||||||||| ||| ||||| |||||| ||| |||| ||||| |
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| T |
45407314 |
ctggtttatttaatcatgaccatagtgcaatgcatcaaaatttatgacttcgtgtttgataaatgtatgacttctctaacaattaaacttaagtggttaa |
45407413 |
T |
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| Q |
522 |
taaattacgattaat |
536 |
Q |
| |
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||| ||||||||||| |
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| T |
45407414 |
taagttacgattaat |
45407428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 594
Target Start/End: Original strand, 45407426 - 45407468
Alignment:
| Q |
552 |
aatattttgagatgaatcttggatggaaatgattttctaccaa |
594 |
Q |
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| T |
45407426 |
aatattttgagatgaatctttaatggaaatgattttctaccaa |
45407468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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