View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_60 (Length: 231)
Name: NF19776_low_60
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_60 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 20471323 - 20471553
Alignment:
| Q |
1 |
aataatactgtcatccatcctcatcattttttggttaatcaaacctaccgtatatttccaaactattctacagaggaaaccagatgacaaaaagatgcac |
100 |
Q |
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| T |
20471323 |
aataatactctcattcatcctcatcattttttggttaatcaaacctgccgtatatttccaaactattctacagaggaaaccagatgacaagaagatgcac |
20471422 |
T |
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| Q |
101 |
ttttatattacagaaaccaggactatgaatgaatgtttttctttcaatatgccattgcaaattatagtggcaggctagcggtgtttacctgtatactggt |
200 |
Q |
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| T |
20471423 |
ttttatattacagacaccaggactatgaatgaatgtttttctttcaatatgccattgcaaattatagtggcaggctagcagtgtttacctgtatactggt |
20471522 |
T |
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| Q |
201 |
ttaggccactttttcgtcccacaaattgcat |
231 |
Q |
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| T |
20471523 |
ttaggccactttttcgtcccgcaaattgcat |
20471553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 44255278 - 44255500
Alignment:
| Q |
4 |
aatactgtcatccatcctcatcattttttggttaatcaaacctaccgtatatttccaaactattctac-agaggaaaccagatgacaaaaagatgcactt |
102 |
Q |
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| T |
44255278 |
aatactcttatccatcctcatcattttttggtttctcaaagatgccatatatttccaaattattctaccagaggaaaccagaagacatgaatatgcgctt |
44255377 |
T |
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| Q |
103 |
ttatat-tacagaaaccaggactatgaatgaatgtttttctttcaatatgccattgcaaattatagtggcaggctagcggtgtttacctgtatactggtt |
201 |
Q |
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| T |
44255378 |
tt-tatatacagaaatcaggactataaatgaatgtttttctctcaataagccattgcaaattacaatggcaggctagcagtgtttacctgtatactggag |
44255476 |
T |
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| Q |
202 |
taggccactttttcgtcccacaaa |
225 |
Q |
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| T |
44255477 |
taggccattttttcctcccacaaa |
44255500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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