View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_64 (Length: 227)
Name: NF19776_low_64
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_64 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 10921995 - 10921771
Alignment:
| Q |
1 |
cccatatatttcttgtcaaataaaccctgcattatattaggatgacaactcaaaagcacaaacaatacatgttatactcaaaagttgctgacctcaatgt |
100 |
Q |
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| T |
10921995 |
cccatatatttattgtcaaataaaccctgcattatattaggatgacaactcaaaagcacaaacaatacatgttgtactcaaaagttgctgacctcaatgt |
10921896 |
T |
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| Q |
101 |
cagttaacaagatataaacctttcacattagctaatacattgagttataaatgtttagaagatagtacaagctgcaaacaaatgcatgtgtctaacaata |
200 |
Q |
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| T |
10921895 |
cagttaacaagatataaacctttcacattagcaaatacattgagttataaatgtttagaagatagtacaagctgcaaacaaatgcatgtgtc--ccaata |
10921798 |
T |
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| Q |
201 |
tagaagatacacatcaataagattttt |
227 |
Q |
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|||||||||| |||||||||||||||| |
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| T |
10921797 |
tagaagatacgcatcaataagattttt |
10921771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 10950341 - 10950297
Alignment:
| Q |
41 |
gatgacaactcaaaagcacaaacaatacatgttatactcaaaagt |
85 |
Q |
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| T |
10950341 |
gatgacaactcaaaggcaccaataatacatgttatattcaaaagt |
10950297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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