View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19776_low_66 (Length: 224)

Name: NF19776_low_66
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19776_low_66
NF19776_low_66
[»] chr7 (1 HSPs)
chr7 (12-205)||(38196740-38196933)
[»] chr5 (1 HSPs)
chr5 (72-205)||(12168566-12168699)
[»] chr2 (3 HSPs)
chr2 (59-205)||(34211543-34211689)
chr2 (59-205)||(18978420-18978566)
chr2 (93-174)||(35582620-35582701)
[»] scaffold0094 (1 HSPs)
scaffold0094 (36-205)||(13953-14122)
[»] chr3 (1 HSPs)
chr3 (38-205)||(25499781-25499948)
[»] chr1 (2 HSPs)
chr1 (72-201)||(19024550-19024679)
chr1 (72-175)||(49914555-49914656)
[»] chr6 (1 HSPs)
chr6 (53-205)||(6509269-6509421)
[»] chr4 (1 HSPs)
chr4 (98-170)||(10478836-10478908)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 38196740 - 38196933
Alignment:
Q  12 gagatgaatgaattatcttttgcccgcaaccaaggatcatcccaaatcgcaatactgtttccatttccaatccgccaccgttgaccacctccaactaata 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38196740 gagatgaatgaattatcttttgcccgcaaccaaggatcatcccaaatcgcaatactgtttccatttccaatccgccaccgttgaccacctccaactaata 38196839  T
Q  112 cctgtgaagcaaagatactacgccatatgaaacttgggttatggcctagacgagcccccaaaaagttagtccttggaaaatatttagctttgta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38196840 cctgtgaagcaaagatactacgccatatgaaacttgggttatggcctagacgagcccccaaaaagttagtccttggaaaatatttagctttgta 38196933  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 72 - 205
Target Start/End: Complemental strand, 12168699 - 12168566
Alignment:
Q  72 ccatttccaatccgccaccgttgaccacctccaactaatacctgtgaagcaaagatactacgccatatgaaacttgggttatggcctagacgagccccca 171  Q
    ||||||||||| ||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||||||||||||||    
T  12168699 ccatttccaattcgccacctttgacctcctctaactaatacctgtaaagcaaagatactacgccatatataactttggttatggcctagacgagccccca 12168600  T
Q  172 aaaagttagtccttggaaaatatttagctttgta 205  Q
    |||| | |||  | ||| ||||||||||||||||    
T  12168599 aaaaataagtgttcggataatatttagctttgta 12168566  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 205
Target Start/End: Complemental strand, 34211689 - 34211543
Alignment:
Q  59 cgcaatactgtttccatttccaatccgccaccgttgaccacctccaactaatacctgtgaagcaaagatactacgccatatgaaacttgggttatggcct 158  Q
    ||||||||| || ||||||||||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||||||| ||  ||||||||||||| |||    
T  34211689 cgcaatactcttaccatttccaattcgccatctttgacctcctctaactattacctgtgaagcaaagatactacgccaaatataacttgggttatgacct 34211590  T
Q  159 agacgagcccccaaaaagttagtccttggaaaatatttagctttgta 205  Q
    ||||| ||||||||||| | |||| |  |||||||||||||||||||    
T  34211589 agacgggcccccaaaaaatcagtcttcagaaaatatttagctttgta 34211543  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 59 - 205
Target Start/End: Original strand, 18978420 - 18978566
Alignment:
Q  59 cgcaatactgtttccatttccaatccgccaccgttgaccacctccaactaatacctgtgaagcaaagatactacgccatatgaaacttgggttatggcct 158  Q
    ||||||||| || |||||| | || | ||| | |||||| |||| ||||| ||||||||||||||||||||||||||| ||  |||||||||||||||||    
T  18978420 cgcaatactcttaccattttcgattcaccatctttgacctcctctaactattacctgtgaagcaaagatactacgccaaatataacttgggttatggcct 18978519  T
Q  159 agacgagcccccaaaaagttagtccttggaaaatatttagctttgta 205  Q
     |||| ||||||||||| | |||| | ||||||||||||||||||||    
T  18978520 tgacgggcccccaaaaaatcagtcttcggaaaatatttagctttgta 18978566  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 35582620 - 35582701
Alignment:
Q  93 tgaccacctccaactaatacctgtgaagcaaagatactacgccatatgaaacttgggttatggcctagacgagcccccaaaa 174  Q
    ||||| |||| ||||| ||| |||||||||||||||| || ||| ||  |||||||||| | ||||||||||||||| ||||    
T  35582620 tgacctcctctaactagtacatgtgaagcaaagataccacaccaaatataacttgggttgtagcctagacgagcccctaaaa 35582701  T

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Target: scaffold0094 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 14122 - 13953
Alignment:
Q  36 cgcaaccaaggatcatcccaaatcgcaatactgtttccatttccaatccgccaccgttgaccacctccaactaatacctgtgaagcaaagatactacgcc 135  Q
    |||||||| |||||   |||||| ||||| || || ||||| ||||| | ||||| |||||| |||| |||||||||||||||||| | |||||||||||    
T  14122 cgcaaccatggatctgtccaaattgcaatgcttttgccattcccaattctccacctttgacctcctctaactaatacctgtgaagcgatgatactacgcc 14023  T
Q  136 atatgaaacttgggttatggcctagacgagcccccaaaaagttagtccttggaaaatatttagctttgta 205  Q
    | ||  |||||||||| |||||||||| |||||||||||| |||||| | ||||||||||||||||||||    
T  14022 aaatataacttgggttgtggcctagacaagcccccaaaaaattagtcttaggaaaatatttagctttgta 13953  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 205
Target Start/End: Complemental strand, 25499948 - 25499781
Alignment:
Q  38 caaccaaggatcatcccaaatcgcaatactgtttccatttccaatccgccaccgttgaccacctccaactaatacctgtgaagcaaagatactacgccat 137  Q
    |||| ||||||||| |||||| |  ||||| || |||||||||| || ||||| ||| |||||||  ||||| |  |||||||||||||||||||||||     
T  25499948 caacgaaggatcattccaaattgagatactcttcccatttccaaccctccacctttggccacctctgactaacatatgtgaagcaaagatactacgccaa 25499849  T
Q  138 atgaaacttgggttatggcctagacgagcccccaaaaagttagtccttggaaaatatttagctttgta 205  Q
    || |||||||||||||||| |||||||||| ||||||| |||||  ||||||||||| ||| ||||||    
T  25499848 ataaaacttgggttatggcatagacgagccaccaaaaaattagttattggaaaatatctagttttgta 25499781  T

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Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 72 - 201
Target Start/End: Original strand, 19024550 - 19024679
Alignment:
Q  72 ccatttccaatccgccaccgttgaccacctccaactaatacctgtgaagcaaagatactacgccatatgaaacttgggttatggcctagacgagccccca 171  Q
    ||||||||||| ||||||| |||||| |||| ||||||||||||||||||||||||||| ||||| ||  | |||||||||||||||||||| |||||||    
T  19024550 ccatttccaatgcgccacctttgaccgcctctaactaatacctgtgaagcaaagatacttcgccaaatatagcttgggttatggcctagacgggccccca 19024649  T
Q  172 aaaagttagtccttggaaaatatttagctt 201  Q
    |||| | |||| |   ||||||||||||||    
T  19024650 aaaaatcagtcttcaaaaaatatttagctt 19024679  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 49914656 - 49914555
Alignment:
Q  72 ccatttccaatccgccaccgttgaccacctccaactaatacctgtgaagcaaagatactacgccatatgaaacttgggttatggcctagacgagccccca 171  Q
    ||||||||||| ||||||| ||| || ||||  |||||||||||||||||||| ||||||||||| ||  |||||||||||||| ||||||| |||||||    
T  49914656 ccatttccaatgcgccacctttggcc-cctctcactaatacctgtgaagcaaaaatactacgccaaatataacttgggttatggtctagacg-gccccca 49914559  T
Q  172 aaaa 175  Q
    ||||    
T  49914558 aaaa 49914555  T

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Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 53 - 205
Target Start/End: Original strand, 6509269 - 6509421
Alignment:
Q  53 ccaaatcgcaatactgtttccatttccaatccgccaccgttgaccacctccaactaatacctgtgaagcaaagatactacgccatatgaaacttgggtta 152  Q
    ||||||||  ||||| || || || |||| || ||||| |||| | |||| |||||| ||||||||| |||| ||||||| ||| || ||||||||||||    
T  6509269 ccaaatcgatatactcttcccgttaccaaccctccacctttgatctcctctaactaacacctgtgaaccaaatatactacaccaaataaaacttgggtta 6509368  T
Q  153 tggcctagacgagcccccaaaaagttagtccttggaaaatatttagctttgta 205  Q
    ||||||||||||| ||||||||| ||||||| ||||||| || ||||||||||    
T  6509369 tggcctagacgagtccccaaaaaattagtccatggaaaaaatctagctttgta 6509421  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 10478908 - 10478836
Alignment:
Q  98 acctccaactaatacctgtgaagcaaagatactacgccatatgaaacttgggttatggcctagacgagccccc 170  Q
    ||||| |||||| || ||||| |||||||||||||| || || |||||||| ||||||||||||| |||||||    
T  10478908 acctctaactaacacatgtgaggcaaagatactacgtcaaataaaacttggattatggcctagaccagccccc 10478836  T

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