View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_69 (Length: 220)
Name: NF19776_low_69
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_69 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 31 - 206
Target Start/End: Original strand, 18326211 - 18326386
Alignment:
| Q |
31 |
ttgttatgaaatagataacacttatgaaaccttaaacatacatttcatcacaaattttcaaatagcggaagtaaagtgaaaaaatataccttaataatta |
130 |
Q |
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|||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18326211 |
ttgtcatgaaatagataatacttgtgaaaccttaaacatacatttcatcacaaattttcaaatagcggaagataagtgaaaaaatataccttaataatta |
18326310 |
T |
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| Q |
131 |
gaatcagatatcaaagacgcaacaaaatcatcttcatcagtacaattgccatattttctatcaatatcatcctttg |
206 |
Q |
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| T |
18326311 |
gaataagatatcaaagacgcaacaaaatcatcttcatcagtgcaattgccatattttctatcagtatcatcctttg |
18326386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 18439186 - 18439011
Alignment:
| Q |
31 |
ttgttatgaaatagataacacttatgaaaccttaaacatacatttcatcacaaattttcaaatagcggaagtaaagtgaaaaaatataccttaataatta |
130 |
Q |
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|||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18439186 |
ttgtcatgaaatagataatacttgtgaaaccttaaacatacatttcatcacaaattttcaaatagcggaagataagtgaaaaaatataccttaataatta |
18439087 |
T |
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| Q |
131 |
gaatcagatatcaaagacgcaacaaaatcatcttcatcagtacaattgccatattttctatcaatatcatcctttg |
206 |
Q |
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| T |
18439086 |
gaataagatatcaaagacgcaacaaaatcatcttcatcagtgcaattgccatattttctatcagtatcatcctttg |
18439011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 18622154 - 18622046
Alignment:
| Q |
61 |
cttaaacatacatttcatcacaaattttcaaatagcggaagtaaagtgaaaaaatataccttaataattagaatcagatatcaaagacgcaacaaaatca |
160 |
Q |
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|||||||||| ||||||||||||| |||||||||| || | ||||||| |||||||||||| ||| | | ||||||| || |||||||||| |||| |
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| T |
18622154 |
cttaaacatatatttcatcacaaagtttcaaatagagggaaaaaagtgacaaaatataccttcatattcataatcagagttcgaagacgcaacttgatca |
18622055 |
T |
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| Q |
161 |
tcttcatca |
169 |
Q |
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||||||||| |
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| T |
18622054 |
tcttcatca |
18622046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 19078650 - 19078745
Alignment:
| Q |
77 |
atcacaaattttcaaatagcggaagtaaagtgaaaaaatataccttaataattagaatcagatatcaaagacgcaacaaaatcatcttcatcagta |
172 |
Q |
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|||||||| ||||||| | ||||| ||||||||||||||||| || ||||| | ||||| || |||||||| ||||| |||||||||||||||| |
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| T |
19078650 |
atcacaaaatttcaaacataggaagaaaagtgaaaaaatatactttcataatgataatcatatttcaaagacacaacatgatcatcttcatcagta |
19078745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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