View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_71 (Length: 213)
Name: NF19776_low_71
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_71 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 45546214 - 45546406
Alignment:
| Q |
21 |
tacttcacaagagaatatgggatgtactagtagtcccttgaattctatcgtaatctaattgcataaagaatgtagaaaagaacatacttggtacttcacg |
120 |
Q |
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| T |
45546214 |
tacttcacaagagaatatgggatgtactagtagtcccttgaattctatcataatctaattgcataaagaatgtagaaaagaacatacttggtacttcacg |
45546313 |
T |
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| Q |
121 |
annnnnnnggtcttgaactattggtttatcctcatccaagtcaccatcatcatcaggaatatgctgagtttcagtgtcatgtccactaccatg |
213 |
Q |
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| T |
45546314 |
atttttttggtcttgaactattggtttatcctcatccaagtcaccatcatcatcaggaatatgctgagtttcagtgtcatgtccactaccatg |
45546406 |
T |
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Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 45551458 - 45551645
Alignment:
| Q |
21 |
tacttcacaagagaatatgggatgtactagtagtcccttgaattctatcgtaatctaattgcataaagaatgtagaaaagaacatacttggtacttcacg |
120 |
Q |
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| T |
45551458 |
tacttcacaagaaaacatggaatgcgccggtagtcccttgaattctagcataatctaattgc--aaataatgtagaaaagaacatacttggtgcttgatg |
45551555 |
T |
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| Q |
121 |
annnnnnnggtcttgaactattggtttatcctcatccaagtcaccatcatcatcaggaatatgctgagtttcagtgtcatgtccactaccatg |
213 |
Q |
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| T |
45551556 |
atcttgtgggtcttgaaccagttgcttatcctcatccaagtcgatatcatcat---gagtatgctgaatttcattgttatgtccattaccatg |
45551645 |
T |
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