View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_73 (Length: 211)
Name: NF19776_low_73
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 28921246 - 28921444
Alignment:
| Q |
1 |
actgtttaggctgcataatagaaacgcacaggtttcaactaagtagcaaagaaaaattctaaatccaatcacagttcttcaaaatcaatactgagagaat |
100 |
Q |
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| T |
28921246 |
actgtttaggctgcataatagaaatgcacaggtttcaactaagtagcaaagaaaaattctaaatccaatcacagttcttcaaaatcaatactgagagaat |
28921345 |
T |
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| Q |
101 |
tgtaacagcaaatatatagtaccagaaaacgattcttgaaaagatcaactatttcttgaggatccactcttgtctgtgtataagcatcaatcttgttca |
199 |
Q |
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| T |
28921346 |
tgtaacagcaaatatatagtaccagaaaacgattcttgaaaagatcaactatttcttgaggatccactcttgtctgtgtataagcatcaattttgttca |
28921444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 28908795 - 28908879
Alignment:
| Q |
115 |
tatagtaccagaaaacgattcttgaaaagatcaactatttcttgaggatccactcttgtctgtgtataagcatcaatcttgttca |
199 |
Q |
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| T |
28908795 |
tataatacctgaaaacgtttcttgaaaagatcgactatttcatgaggatccactcttgtctgagtataagcatcaatcttgttca |
28908879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 28913404 - 28913447
Alignment:
| Q |
156 |
ttgaggatccactcttgtctgtgtataagcatcaatcttgttca |
199 |
Q |
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| T |
28913404 |
ttgaggatccactcttgtctgtgtataagcaccaatcttgttca |
28913447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 28913246 - 28913336
Alignment:
| Q |
1 |
actgtttaggctgcataatagaaacgcacaggtttcaactaagtagcaaaga-aaaattctaaatccaatcacagttcttcaaaatcaata |
90 |
Q |
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| T |
28913246 |
actgttgaggctgcacaatagaaatgtacaagtttcaaccaagtagcaaagagaaaaatcagaatcaaatcagaattcttcaaaatcaata |
28913336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 1973282 - 1973239
Alignment:
| Q |
156 |
ttgaggatccactcttgtctgtgtataagcatcaatcttgttca |
199 |
Q |
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| T |
1973282 |
ttgaggatccactcttgtctgtgtataagcatcaatcttgttca |
1973239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 40287856 - 40287933
Alignment:
| Q |
120 |
taccagaaaacgattcttgaaaagatcaactatttcttgaggatccactcttgtctgtgtataagcatcaatcttgtt |
197 |
Q |
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| T |
40287856 |
taccagaaagcgtttcttgaaaatatcaataatttcatttggatcggcccttgtctgtgtataagcatcaatcttgtt |
40287933 |
T |
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