View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19776_low_76 (Length: 202)

Name: NF19776_low_76
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19776_low_76
NF19776_low_76
[»] chr4 (12 HSPs)
chr4 (105-155)||(17260547-17260597)
chr4 (105-155)||(23095150-23095200)
chr4 (105-158)||(30260801-30260854)
chr4 (105-161)||(13860663-13860719)
chr4 (105-151)||(4439829-4439875)
chr4 (105-151)||(4440358-4440404)
chr4 (105-155)||(29005122-29005172)
chr4 (105-155)||(36898704-36898754)
chr4 (105-151)||(37065764-37065809)
chr4 (104-149)||(3729117-3729162)
chr4 (110-151)||(19730694-19730735)
chr4 (105-157)||(4921200-4921251)
[»] chr3 (8 HSPs)
chr3 (105-151)||(36661566-36661612)
chr3 (106-155)||(23301750-23301799)
chr3 (105-155)||(13844633-13844683)
chr3 (105-143)||(25704201-25704239)
chr3 (106-139)||(45877696-45877729)
chr3 (105-137)||(9588053-9588085)
chr3 (105-161)||(46483072-46483128)
chr3 (105-157)||(50648425-50648476)
[»] chr1 (8 HSPs)
chr1 (105-155)||(1702086-1702136)
chr1 (105-151)||(29068924-29068970)
chr1 (105-161)||(44949357-44949413)
chr1 (108-151)||(19275277-19275320)
chr1 (105-151)||(11931754-11931800)
chr1 (105-155)||(24228429-24228478)
chr1 (105-151)||(29019043-29019089)
chr1 (105-157)||(27288431-27288482)
[»] scaffold0003 (1 HSPs)
scaffold0003 (105-161)||(301322-301378)
[»] chr7 (7 HSPs)
chr7 (105-157)||(1302855-1302907)
chr7 (105-158)||(14104209-14104262)
chr7 (105-158)||(14414226-14414279)
chr7 (105-161)||(20388013-20388069)
chr7 (105-152)||(17076537-17076584)
chr7 (105-155)||(47396244-47396294)
chr7 (106-143)||(39012835-39012872)
[»] chr5 (13 HSPs)
chr5 (105-155)||(40415391-40415441)
chr5 (105-161)||(20068726-20068782)
chr5 (105-152)||(35169193-35169240)
chr5 (105-151)||(3298543-3298589)
chr5 (105-151)||(7783221-7783267)
chr5 (105-151)||(7784016-7784062)
chr5 (105-155)||(16467160-16467210)
chr5 (105-155)||(38184572-38184622)
chr5 (105-155)||(38213735-38213785)
chr5 (105-151)||(40506613-40506659)
chr5 (105-151)||(41482515-41482561)
chr5 (106-151)||(3391432-3391477)
chr5 (106-143)||(32241361-32241398)
[»] chr2 (6 HSPs)
chr2 (105-151)||(12411385-12411431)
chr2 (105-151)||(12423445-12423491)
chr2 (105-155)||(44719893-44719943)
chr2 (106-151)||(9261377-9261422)
chr2 (105-155)||(44196417-44196467)
chr2 (105-157)||(14100506-14100557)
[»] chr8 (4 HSPs)
chr8 (105-161)||(23017852-23017908)
chr8 (105-151)||(24982695-24982741)
chr8 (105-151)||(42708985-42709031)
chr8 (106-155)||(23097885-23097934)


Alignment Details
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 17260547 - 17260597
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaa 155  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  17260547 gtttgttgagatatttatgtcaaataaaatattagttttaaaaaataaaaa 17260597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 23095200 - 23095150
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaa 155  Q
    |||||||||||||||||||  |||||||||||| |||||| ||||||||||    
T  23095200 gtttgttgagatatttatgccaaataaaatattggttttaaaaaataaaaa 23095150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 30260801 - 30260854
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaatat 158  Q
    |||||||||||||||||||  |||| ||||||| |||||| |||||||||||||    
T  30260801 gtttgttgagatatttatgccaaattaaatattggttttaaaaaataaaaatat 30260854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 13860719 - 13860663
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaatattga 161  Q
    ||||||||| |||||| ||| ||||||||||||  ||||| ||||||||||||||||    
T  13860719 gtttgttgaaatatttttggcaaataaaatattgattttaaaaaataaaaatattga 13860663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 4439875 - 4439829
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    |||||||||||||||||||  |||| |||||||||||||| ||||||    
T  4439875 gtttgttgagatatttatgccaaatcaaatattagttttaaaaaata 4439829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 4440404 - 4440358
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    |||||||||||||||||||  |||||||||||| |||||| ||||||    
T  4440404 gtttgttgagatatttatgccaaataaaatattggttttaaaaaata 4440358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 29005122 - 29005172
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaa 155  Q
    |||||||||||||||||||  |||| ||||||| |||||| ||||||||||    
T  29005122 gtttgttgagatatttatgtcaaattaaatattggttttaaaaaataaaaa 29005172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 36898704 - 36898754
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaa 155  Q
    |||||||||||||||||||  |||| ||||||| |||||| ||||||||||    
T  36898704 gtttgttgagatatttatgtcaaatcaaatattggttttaaaaaataaaaa 36898754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 37065809 - 37065764
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||    
T  37065809 gtttgttga-atatttatgtgaaataaaatattagttttagaaaata 37065764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 3729162 - 3729117
Alignment:
Q  104 tgtttgttgagatatttatggtaaataaaatattagttttagaaaa 149  Q
    ||||||||||||||||||||  |||| |||||||||||||| ||||    
T  3729162 tgtttgttgagatatttatgccaaatcaaatattagttttaaaaaa 3729117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 19730694 - 19730735
Alignment:
Q  110 ttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    ||||||||||||||  ||||||| ||||||||||||||||||    
T  19730694 ttgagatatttatgccaaataaagtattagttttagaaaata 19730735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 4921251 - 4921200
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaata 157  Q
    ||||||||||||||||||   ||||||||||||| ||||| ||||||||||||    
T  4921251 gtttgttgagatatttatttgaaataaaatattaatttta-aaaataaaaata 4921200  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 36661566 - 36661612
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||    
T  36661566 gtttgttgagatattcatgctaaataaaatattagttttagaaaata 36661612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 23301799 - 23301750
Alignment:
Q  106 tttgttgagatatttatggtaaataaaatattagttttagaaaataaaaa 155  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||    
T  23301799 tttgttgagatatttataccaaataaaatattagttttagaaaataaaaa 23301750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 13844683 - 13844633
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaa 155  Q
    |||||||||||||||||||  ||||||||||||| ||||| ||||| ||||    
T  13844683 gtttgttgagatatttatgcgaaataaaatattaattttaaaaaattaaaa 13844633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 25704201 - 25704239
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagtttt 143  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  25704201 gtttgttgagatatttatgttaaataaaatattggtttt 25704239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 45877696 - 45877729
Alignment:
Q  106 tttgttgagatatttatggtaaataaaatattag 139  Q
    |||||||||||||||||| |||||||||||||||    
T  45877696 tttgttgagatatttatgttaaataaaatattag 45877729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 9588085 - 9588053
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatatt 137  Q
    ||||||||||||||||||| |||||||||||||    
T  9588085 gtttgttgagatatttatgataaataaaatatt 9588053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 46483128 - 46483072
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaatattga 161  Q
    ||||||||| |||||||||  || ||||||||| |||||| | ||||||||||||||    
T  46483128 gtttgttgaaatatttatgtcaattaaaatattggttttaaataataaaaatattga 46483072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 50648425 - 50648476
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaata 157  Q
    ||||||||||||||||||   ||||||||||||| ||||| ||||||||||||    
T  50648425 gtttgttgagatatttatttgaaataaaatattaatttta-aaaataaaaata 50648476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 1702136 - 1702086
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaa 155  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||||||||    
T  1702136 gtttgttgagatatttatggcaaataaaatattaattttaaaaaataaaaa 1702086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 29068924 - 29068970
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||    
T  29068924 gtttgttgagatatttatgtcaaataaaatattagttttagaaaata 29068970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 44949357 - 44949413
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaatattga 161  Q
    |||||||||||||||||||  ||||||||||||||||||| || | |||||||||||    
T  44949357 gtttgttgagatatttatgccaaataaaatattagttttaaaataaaaaaatattga 44949413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 19275320 - 19275277
Alignment:
Q  108 tgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    |||||||||||||||| |||||||||||||||||||| ||||||    
T  19275320 tgttgagatatttatgctaaataaaatattagttttataaaata 19275277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 11931800 - 11931754
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    |||||||||||||||||||  |||||||||||| |||||| ||||||    
T  11931800 gtttgttgagatatttatgccaaataaaatattggttttaaaaaata 11931754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 24228478 - 24228429
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaa 155  Q
    |||||||||||||||||||  |||||||||||| |||||| ||||||||||    
T  24228478 gtttgttgagatatttatgtcaaataaaatattggtttta-aaaataaaaa 24228429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 29019089 - 29019043
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    |||||||||||||||||||  |||| ||||||| |||||||||||||    
T  29019089 gtttgttgagatatttatgtcaaatcaaatattggttttagaaaata 29019043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 27288482 - 27288431
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaata 157  Q
    ||||||||||||||||||   ||||||||||||| ||||| ||||||||||||    
T  27288482 gtttgttgagatatttatttgaaataaaatattaatttta-aaaataaaaata 27288431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 301322 - 301378
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaatattga 161  Q
    |||||||||| ||||||||  |||||||||||||||||||  |||||||||||||||    
T  301322 gtttgttgagttatttatgtcaaataaaatattagttttatgaaataaaaatattga 301378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 1302907 - 1302855
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaata 157  Q
    ||||||||||||||||||| | ||||||||||||| |||||||| ||||||||    
T  1302907 gtttgttgagatatttatgctgaataaaatattagatttagaaattaaaaata 1302855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 14104262 - 14104209
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaatat 158  Q
    |||||||||||||||||||  |||| ||||||| |||||| |||||||||||||    
T  14104262 gtttgttgagatatttatgtcaaattaaatattggttttaaaaaataaaaatat 14104209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 14414279 - 14414226
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaatat 158  Q
    |||||||||||||||||||  |||| ||||||| |||||| |||||||||||||    
T  14414279 gtttgttgagatatttatgtcaaattaaatattggttttaaaaaataaaaatat 14414226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 20388013 - 20388069
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaatattga 161  Q
    ||||||| || ||||||||  |||||||||||||||||||  |||||||||||||||    
T  20388013 gtttgtttagttatttatgtcaaataaaatattagttttatgaaataaaaatattga 20388069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 17076537 - 17076584
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataa 152  Q
    |||||||||||||||||||  |||||||||||| |||||| |||||||    
T  17076537 gtttgttgagatatttatgcaaaataaaatatttgttttaaaaaataa 17076584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 47396294 - 47396244
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaa 155  Q
    |||||||||||||||||||  || ||||||||| |||||| ||||||||||    
T  47396294 gtttgttgagatatttatgtcaattaaaatattggttttaaaaaataaaaa 47396244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 39012835 - 39012872
Alignment:
Q  106 tttgttgagatatttatggtaaataaaatattagtttt 143  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  39012835 tttgttgagatatttatgttaaataaaatatttgtttt 39012872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 40415441 - 40415391
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaa 155  Q
    |||||||||||||||||||  |||||||||||| |||||| ||||||||||    
T  40415441 gtttgttgagatatttatgtcaaataaaatattggttttaaaaaataaaaa 40415391  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 20068726 - 20068782
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaatattga 161  Q
    |||||||||| ||||||||  ||||||||||||| |||||  |||||||||||||||    
T  20068726 gtttgttgagttatttatgtcaaataaaatattaattttaagaaataaaaatattga 20068782  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 35169240 - 35169193
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataa 152  Q
    |||||||||||||||||||  |||| |||||||||||||| |||||||    
T  35169240 gtttgttgagatatttatgtcaaattaaatattagttttaaaaaataa 35169193  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 3298543 - 3298589
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    ||||||||| |||||||||  ||||||||||||||||||| ||||||    
T  3298543 gtttgttgaaatatttatgtcaaataaaatattagttttataaaata 3298589  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 7783267 - 7783221
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    |||||||||||||||||||  |||| |||||||||||||| ||||||    
T  7783267 gtttgttgagatatttatgcaaaatcaaatattagttttaaaaaata 7783221  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 7784062 - 7784016
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    |||||||||||||||||||  |||| |||||||||||||| ||||||    
T  7784062 gtttgttgagatatttatgccaaattaaatattagttttaaaaaata 7784016  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 16467210 - 16467160
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaa 155  Q
    |||||||||||||||||||  |||| ||||||| |||||| ||||||||||    
T  16467210 gtttgttgagatatttatgccaaatcaaatattggttttaaaaaataaaaa 16467160  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 38184572 - 38184622
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaa 155  Q
    ||||||||||||||||||   ||||||||||||| ||||| ||||||||||    
T  38184572 gtttgttgagatatttatacgaaataaaatattaattttaaaaaataaaaa 38184622  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 38213785 - 38213735
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaa 155  Q
    ||||||||||||||||||   ||||||||||||| ||||| ||||||||||    
T  38213785 gtttgttgagatatttatacgaaataaaatattaattttaaaaaataaaaa 38213735  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 40506659 - 40506613
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    |||||||||||||||||||  |||| |||||||||||||| ||||||    
T  40506659 gtttgttgagatatttatgccaaatcaaatattagttttaaaaaata 40506613  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 41482515 - 41482561
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    |||||||||||||| ||||  ||||||||||||||||||| ||||||    
T  41482515 gtttgttgagatatgtatgacaaataaaatattagttttaaaaaata 41482561  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 3391432 - 3391477
Alignment:
Q  106 tttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    |||||||| |||||||||  ||||||||||||||||||| ||||||    
T  3391432 tttgttgaaatatttatgtcaaataaaatattagttttataaaata 3391477  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 32241361 - 32241398
Alignment:
Q  106 tttgttgagatatttatggtaaataaaatattagtttt 143  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  32241361 tttgttgagatatttatgtcaaataaaatattagtttt 32241398  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 12411431 - 12411385
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    |||||||||||||||||||  |||||| |||||||||||||||||||    
T  12411431 gtttgttgagatatttatgcaaaataatatattagttttagaaaata 12411385  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 12423491 - 12423445
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    |||||||||||||||||||  |||||| |||||||||||||||||||    
T  12423491 gtttgttgagatatttatgcaaaataatatattagttttagaaaata 12423445  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 44719893 - 44719943
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaa 155  Q
    |||||||||||||||||||  |||| |||||||||||||| ||||||||||    
T  44719893 gtttgttgagatatttatgccaaattaaatattagttttaaaaaataaaaa 44719943  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 9261422 - 9261377
Alignment:
Q  106 tttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    |||||| |||||||||||  ||||||||||||||||||||||||||    
T  9261422 tttgttaagatatttatgccaaataaaatattagttttagaaaata 9261377  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 44196417 - 44196467
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaa 155  Q
    ||||||||||||||||||| ||| | ||||||| |||||| ||||||||||    
T  44196417 gtttgttgagatatttatgctaattcaaatattggttttaaaaaataaaaa 44196467  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 14100557 - 14100506
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaata 157  Q
    ||||||||||||||||||   ||||||||||||| ||||| ||||||||||||    
T  14100557 gtttgttgagatatttatttgaaataaaatattaatttta-aaaataaaaata 14100506  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 23017852 - 23017908
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaataaaaatattga 161  Q
    |||||||||| ||||||||  |||||||||||||||||||  ||||||| |||||||    
T  23017852 gtttgttgagttatttatgtcaaataaaatattagttttaagaaataaatatattga 23017908  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 24982741 - 24982695
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    |||||||||||||||||||  |||| |||||||||||||| ||||||    
T  24982741 gtttgttgagatatttatgccaaatcaaatattagttttaaaaaata 24982695  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 42709031 - 42708985
Alignment:
Q  105 gtttgttgagatatttatggtaaataaaatattagttttagaaaata 151  Q
    ||||||||||||||||||| ||||| ||||||| |||||| ||||||    
T  42709031 gtttgttgagatatttatgctaaatcaaatattggttttaaaaaata 42708985  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 23097934 - 23097885
Alignment:
Q  106 tttgttgagatatttatggtaaataaaatattagttttagaaaataaaaa 155  Q
    |||||||||||||| |||  ||||||||||||  ||||||||||||||||    
T  23097934 tttgttgagatattcatgtcaaataaaatattgtttttagaaaataaaaa 23097885  T

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