View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19776_low_8 (Length: 583)

Name: NF19776_low_8
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19776_low_8
NF19776_low_8
[»] chr6 (17 HSPs)
chr6 (19-381)||(28729844-28730208)
chr6 (19-381)||(28720329-28720690)
chr6 (441-572)||(28730268-28730400)
chr6 (245-381)||(28713819-28713946)
chr6 (144-214)||(6793526-6793596)
chr6 (144-209)||(512780-512845)
chr6 (142-213)||(31175981-31176052)
chr6 (148-209)||(457686-457747)
chr6 (148-209)||(24226095-24226156)
chr6 (144-203)||(26847183-26847242)
chr6 (142-208)||(31196631-31196697)
chr6 (459-508)||(7792679-7792728)
chr6 (144-213)||(8585735-8585804)
chr6 (42-112)||(28713746-28713817)
chr6 (441-480)||(28720743-28720782)
chr6 (155-213)||(32267018-32267076)
chr6 (144-209)||(28963579-28963644)
[»] chr2 (9 HSPs)
chr2 (114-209)||(13772743-13772838)
chr2 (144-213)||(28640129-28640198)
chr2 (142-209)||(21836023-21836088)
chr2 (147-213)||(40204719-40204785)
chr2 (156-209)||(6752075-6752128)
chr2 (156-209)||(23395970-23396023)
chr2 (156-209)||(32832594-32832647)
chr2 (156-209)||(39729023-39729076)
chr2 (156-209)||(41069674-41069727)
[»] chr8 (10 HSPs)
chr8 (144-209)||(44132862-44132927)
chr8 (142-213)||(1898084-1898155)
chr8 (149-208)||(15135964-15136023)
chr8 (142-209)||(20896174-20896241)
chr8 (145-204)||(33681264-33681322)
chr8 (129-209)||(226320-226400)
chr8 (129-209)||(702733-702813)
chr8 (129-209)||(739943-740023)
chr8 (129-209)||(863838-863918)
chr8 (156-213)||(4834971-4835028)
[»] chr4 (11 HSPs)
chr4 (148-208)||(36498592-36498652)
chr4 (148-214)||(52198380-52198446)
chr4 (144-209)||(50041803-50041868)
chr4 (144-209)||(50049025-50049090)
chr4 (144-214)||(44015401-44015471)
chr4 (145-207)||(34765127-34765189)
chr4 (156-209)||(5052125-5052178)
chr4 (153-211)||(19473049-19473107)
chr4 (156-209)||(29544163-29544216)
chr4 (156-209)||(46079341-46079394)
chr4 (156-209)||(52673199-52673252)
[»] chr3 (3 HSPs)
chr3 (142-209)||(34305824-34305891)
chr3 (156-209)||(10688645-10688698)
chr3 (146-207)||(42681827-42681888)
[»] chr7 (6 HSPs)
chr7 (142-206)||(22715803-22715867)
chr7 (143-203)||(32204785-32204845)
chr7 (146-207)||(23021207-23021266)
chr7 (148-201)||(33957474-33957527)
chr7 (156-213)||(40591048-40591105)
chr7 (148-209)||(43279245-43279305)
[»] chr1 (12 HSPs)
chr1 (144-206)||(4213829-4213891)
chr1 (156-213)||(3950296-3950353)
chr1 (144-209)||(46325580-46325644)
chr1 (144-211)||(49315723-49315790)
chr1 (147-209)||(19431382-19431444)
chr1 (144-209)||(46325450-46325514)
chr1 (127-213)||(26056823-26056910)
chr1 (149-203)||(44448492-44448546)
chr1 (156-209)||(48914986-48915039)
chr1 (156-209)||(48915377-48915430)
chr1 (148-209)||(11872181-11872242)
chr1 (157-214)||(49177427-49177483)
[»] chr5 (12 HSPs)
chr5 (148-209)||(3622195-3622256)
chr5 (146-209)||(3622318-3622381)
chr5 (156-213)||(34928827-34928884)
chr5 (143-209)||(8230766-8230832)
chr5 (155-209)||(19824621-19824675)
chr5 (147-209)||(22029842-22029904)
chr5 (149-209)||(33953165-33953225)
chr5 (159-209)||(9956644-9956694)
chr5 (155-203)||(14281809-14281858)
chr5 (149-198)||(33922856-33922905)
chr5 (153-209)||(17250466-17250521)
chr5 (142-178)||(37179704-37179740)
[»] scaffold0085 (1 HSPs)
scaffold0085 (142-209)||(31608-31675)


Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 28729844 - 28730208
Alignment:
Q  19 caacatgtattaaaattgttcacaatagtgacactactacctataccttccttttggtggatactgatttatttttcggttaatacacttgaacgcggat 118  Q
    ||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  28729844 caacatgtattcaaactattcacaatagtgacactactgcctataccttccttttggtggatactgatttatttttcggttt-tacacttgaacgcggat 28729942  T
Q  119 agcacttcggtgactttgagttcgatgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaagat---g 215  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  28729943 agcacttcggtgactttgagttcgatgactttaatgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaagatagag 28730042  T
Q  216 atggtcaccaaaattacggagatgttacccttaaaaacacacatgaacgtgttattaccttatgaacaaagaggaaacctatgttgcaacttgcaatgaa 315  Q
    |  |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28730043 acagtcaccaaaattaccgagatgttacctttaaaaacacacatgaacgtgttattaccttatgaacaaagaggaaacctatgttgcaacttgcaatgaa 28730142  T
Q  316 gaaaatgtcaggagtagcttactttctcttggaaacacacacatcactataatcctttcattgaga 381  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28730143 gaaaatggcaggagtagcttactttctcttggaaacacacacatcactataatcctttcattgaga 28730208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 28720329 - 28720690
Alignment:
Q  19 caacatgtattaaaattgttcacaatagtgacactactacctataccttccttttggtggatactgatttatttttcggttaatacacttgaacgcggat 118  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28720329 caacatgtattcaaactgttcacaatagtgacactactacctataccttccttttggtggatactgatttatttttcggttaatacacttaaacgcggat 28720428  T
Q  119 agcacttcggtgactttgagttcgatgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaagat---g 215  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||   |    
T  28720429 agcacttcggtgactttgagttcgatgactttattgtattttaaatgagaaagaatgatagatcagtgcttaaaataaattattttgatgaaagatagag 28720528  T
Q  216 atggtcaccaaaattacggagatgttacccttaaaaacacacatgaacgtgttattaccttatgaacaaagaggaaacctatgttgcaacttgcaatgaa 315  Q
    |  |||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  28720529 acagtcaccaaaattatcgagatgttaccctcaaaaacacacatgaacgtgttattaccttatgaacaaagaggaaacccatgttgcaacttg-aatgaa 28720627  T
Q  316 gaaaatgtcaggagtagcttactttctcttggaaacacacacatcactataatcctttcattgaga 381  Q
    |||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||    
T  28720628 gaaaatgtcaggagtagcttac-ttctcttggaa--acacacatcactataatcctttcattgaga 28720690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 441 - 572
Target Start/End: Original strand, 28730268 - 28730400
Alignment:
Q  441 ctatcagttgagatccatctttgtgagttaagcaagcttcacttcatctttggagttcacttgttttcggatcaccaagctgagatacacctttttt-cg 539  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28730268 ctatcagttgagatccatctttgtgaggtaagcaagcttcacttcatctttggagttcacttgttttcggatcaccaagctgagatacaccttttttacg 28730367  T
Q  540 gtacaagtctttgcatgtataagccgagttcat 572  Q
    ||||||||||||||||||||||||| |||||||    
T  28730368 gtacaagtctttgcatgtataagccaagttcat 28730400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 245 - 381
Target Start/End: Original strand, 28713819 - 28713946
Alignment:
Q  245 cttaaaaacacacatgaacgtgttattaccttatgaacaaagaggaaacctatgttgcaacttgcaatgaagaaaatgtcaggagtagcttactttctct 344  Q
    ||||||||||||||||||| || ||||| | |||||||||||||||||||||||||||||| ||||||||||||||         || ||||||||||||    
T  28713819 cttaaaaacacacatgaacatgctattaacctatgaacaaagaggaaacctatgttgcaacctgcaatgaagaaaa---------tatcttactttctct 28713909  T
Q  345 tggaaacacacacatcactataatcctttcattgaga 381  Q
    |||||||||||||||||||||||||||||||||||||    
T  28713910 tggaaacacacacatcactataatcctttcattgaga 28713946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 6793596 - 6793526
Alignment:
Q  144 tgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaagat 214  Q
    |||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| ||||    
T  6793596 tgactttagtgtattttagatgagagagaacgatagatgagtgattaaaataaattattttgatgagagat 6793526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 512845 - 512780
Alignment:
Q  144 tgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||    
T  512845 tgactttagtgtattttagatgagagagaataatagatgagtgattaaaataaattattttgatga 512780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 31176052 - 31175981
Alignment:
Q  142 gatgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaaga 213  Q
    ||||||||||||||||||||||||||| |||||||||||   ||| ||||| ||||||||||||||| ||||    
T  31176052 gatgactttagtgtattttagatgagaaagaatgatagacgtgtgattaaattaaattattttgatgcaaga 31175981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 457747 - 457686
Alignment:
Q  148 tttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||||||||||||||||||||||||||||| ||| | || |||||||||||||||| |||||    
T  457747 tttagtgtattttagatgagagagaatgatggatgaatgattaaaataaattatttagatga 457686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 24226156 - 24226095
Alignment:
Q  148 tttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||| ||||||||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  24226156 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttgatga 24226095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 26847242 - 26847183
Alignment:
Q  144 tgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattt 203  Q
    |||| ||||||||||||||||||||||||||||||||| | ||  |||||||||||||||    
T  26847242 tgacattagtgtattttagatgagagagaatgatagatgaatgagtaaaataaattattt 26847183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 31196697 - 31196631
Alignment:
Q  142 gatgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatg 208  Q
    ||||||||||||||||||||||||||| |||||||||||   ||| |||||  ||||||||||||||    
T  31196697 gatgactttagtgtattttagatgagaaagaatgatagaagtgtgattaaatcaaattattttgatg 31196631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 459 - 508
Target Start/End: Original strand, 7792679 - 7792728
Alignment:
Q  459 ctttgtgagttaagcaagcttcacttcatctttggagttcacttgttttc 508  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  7792679 ctttgtgaggtaagcaagcttcacttcatctttggagttaacttattttc 7792728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 8585804 - 8585735
Alignment:
Q  144 tgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaaga 213  Q
    |||| |||||||||||||||||| |||||||||| ||| | || ||||||||||| |||| |||||||||    
T  8585804 tgacattagtgtattttagatgaaagagaatgatggatgaatgattaaaataaatgatttagatgaaaga 8585735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 28713746 - 28713817
Alignment:
Q  42 aatagtgacactactacctataccttccttttggtggatactgatt-tatttttcggttaatacacttgaac 112  Q
    |||||||||||||||||| | ||||||| |||||| ||||||| || | |||||||||||||||| ||||||    
T  28713746 aatagtgacactactaccaacaccttccatttggtagatactgtttatttttttcggttaatacagttgaac 28713817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 480
Target Start/End: Original strand, 28720743 - 28720782
Alignment:
Q  441 ctatcagttgagatccatctttgtgagttaagcaagcttc 480  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  28720743 ctatcagttgagatccatctttgtgaggtaagcaagcttc 28720782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 32267018 - 32267076
Alignment:
Q  155 tattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaaga 213  Q
    ||||||||||||  ||||||||||||| | || ||||||||||||||| ||||| ||||    
T  32267018 tattttagatgaatgagaatgatagattaatgattaaaataaattattctgatggaaga 32267076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 28963579 - 28963644
Alignment:
Q  144 tgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||| |||||| |||||||||||||||||||||   || | || ||||||||| ||||||||||||    
T  28963579 tgacattagtgcattttagatgagagagaatgaagaatgaatgattaaaataacttattttgatga 28963644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 114 - 209
Target Start/End: Original strand, 13772743 - 13772838
Alignment:
Q  114 cggatagcacttcggtgactttgagttcgatgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||||||||||| | ||||| |||||| |||| ||||| ||||| ||||||||||    
T  13772743 cggatagcacttccgagactttgagctcgatgactttagtgtattttagatgaaaaagaataatagatgagtgattaaattaaatcattttgatga 13772838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 28640129 - 28640198
Alignment:
Q  144 tgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaaga 213  Q
    ||||||||||||||||||||||| |||||||||||||| | || |||||||||||||||||||| |||||    
T  28640129 tgactttagtgtattttagatgaaagagaatgatagatgaatgattaaaataaattattttgataaaaga 28640198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 21836088 - 21836023
Alignment:
Q  142 gatgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||||||||||||||||| |||  |||||||||||||||| |||| ||||||||||||||||||||||    
T  21836088 gatgactttagtgtatttcaga--agagagaatgatagatgagtgattaaaataaattattttgatga 21836023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 40204719 - 40204785
Alignment:
Q  147 ctttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaaga 213  Q
    ||||||| ||||||| ||||||||||||||||||| | |  |||||||||||||||| | |||||||    
T  40204719 ctttagtttattttacatgagagagaatgatagatgaattattaaaataaattatttaggtgaaaga 40204785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 6752075 - 6752128
Alignment:
Q  156 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||||||||||| || | || |||||||||||||||| |||||    
T  6752075 attttagatgagagagaatgataaatgaatgattaaaataaattatttagatga 6752128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 23396023 - 23395970
Alignment:
Q  156 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||||||||||| || | || |||||||||||||||| |||||    
T  23396023 attttagatgagagagaatgataaatgaatgattaaaataaattatttagatga 23395970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 32832594 - 32832647
Alignment:
Q  156 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||||||||||||||||||| | ||| | || |||||||||||||||| |||||    
T  32832594 attttagatgagagagaatgttggatgaatgattaaaataaattatttagatga 32832647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 39729076 - 39729023
Alignment:
Q  156 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||||||||||  || | || |||||||||||||||| |||||    
T  39729076 attttagatgagagagaatgatgaatgaatgattaaaataaattatttagatga 39729023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 41069674 - 41069727
Alignment:
Q  156 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||||||||||  || | || |||||||||||||||| |||||    
T  41069674 attttagatgagagagaatgatgaatgaatgattaaaataaattatttagatga 41069727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 44132862 - 44132927
Alignment:
Q  144 tgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  44132862 tgactttagtgtattttagatgagagataatgatagatgaatgattaaaataaattattttgatga 44132927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 1898084 - 1898155
Alignment:
Q  142 gatgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaaga 213  Q
    |||||||||||| |||||||||||||||||||||||| || | || |||||||||||||||||||| |||||    
T  1898084 gatgactttagtatattttagatgagagagaatgatatataactgattaaaataaattattttgataaaaga 1898155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 15136023 - 15135964
Alignment:
Q  149 ttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatg 208  Q
    |||||||||||||||| ||||| | |||||||| |||| |||||||||||||||||||||    
T  15136023 ttagtgtattttagataagagaaagtgatagatgagtgattaaaataaattattttgatg 15135964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 20896174 - 20896241
Alignment:
Q  142 gatgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||||| |||||| ||||||||||||||| ||||||| || | || |||||||||||||||| |||||    
T  20896174 gatgacgttagtgcattttagatgagagataatgatatatgaatgattaaaataaattatttagatga 20896241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 33681264 - 33681322
Alignment:
Q  145 gactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattatttt 204  Q
    |||||||||||||||| |||| ||||||||||||||| | || |||||||||||||||||    
T  33681264 gactttagtgtatttt-gatgtgagagaatgatagataaatgattaaaataaattatttt 33681322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 226320 - 226400
Alignment:
Q  129 tgactttgagttcgatgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||||||| ||| | ||||||||||||||||||||||| ||||| | |||  | | || |||||||||||||| |||||||    
T  226320 tgactttgtgtttggtgactttagtgtattttagatgaaagagagttataattgaatgattaaaataaattatgttgatga 226400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 702733 - 702813
Alignment:
Q  129 tgactttgagttcgatgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||||||| ||| | ||||||||||||||||||||||| ||||| | |||  | | || |||||||||||||| |||||||    
T  702733 tgactttgtgtttggtgactttagtgtattttagatgaaagagagttataattgaatgattaaaataaattatgttgatga 702813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 739943 - 740023
Alignment:
Q  129 tgactttgagttcgatgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||||||| ||| | ||||||||||||||||||||||| ||||| | |||  | | || |||||||||||||| |||||||    
T  739943 tgactttgtgtttggtgactttagtgtattttagatgaaagagagttataattgaatgattaaaataaattatgttgatga 740023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 863838 - 863918
Alignment:
Q  129 tgactttgagttcgatgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||||||| ||| | ||||||||||||||||||||||| ||||| | |||  | | || |||||||||||||| |||||||    
T  863838 tgactttgtgtttggtgactttagtgtattttagatgaaagagagttataattgaatgattaaaataaattatgttgatga 863918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 4834971 - 4835028
Alignment:
Q  156 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaaga 213  Q
    ||||||||||||||||||||||  || | || |||||||||||||||| | |||||||    
T  4834971 attttagatgagagagaatgatgaatgaatgattaaaataaattatttaggtgaaaga 4835028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 36498592 - 36498652
Alignment:
Q  148 tttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatg 208  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||    
T  36498592 tttagtgtattttagatgagagaggatgatagatgagtgattaaaataaattattttgatg 36498652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 52198446 - 52198380
Alignment:
Q  148 tttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaagat 214  Q
    ||||||||||||||||||||||| |||||||||| | || |||||||||||||||||||||| ||||    
T  52198446 tttagtgtattttagatgagagataatgatagataaatgattaaaataaattattttgatgagagat 52198380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 50041803 - 50041868
Alignment:
Q  144 tgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||||||||||| |||||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  50041803 tgactttagtgtgttttagatgagagataatgatagatgaatgattaaaataaattattttgatga 50041868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 50049025 - 50049090
Alignment:
Q  144 tgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||||||||||| |||||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  50049025 tgactttagtgtgttttagatgagagataatgatagatgaatgattaaaataaattattttgatga 50049090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 44015401 - 44015471
Alignment:
Q  144 tgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaagat 214  Q
    |||| |||||||||||||||||||| |||||||||||| | || |||||||||||||||| ||||| ||||    
T  44015401 tgacattagtgtattttagatgagaaagaatgatagatgaatgattaaaataaattatttagatgagagat 44015471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 34765189 - 34765127
Alignment:
Q  145 gactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgat 207  Q
    ||||||||||||||||| |||| ||||||||||||||  ||| ||| |||||| |||||||||    
T  34765189 gactttagtgtattttatatgaaagagaatgatagatatgtgattataataaactattttgat 34765127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 5052178 - 5052125
Alignment:
Q  156 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||||| |||||||||||||||| || | || ||||||||||||||||||||||    
T  5052178 attttaaatgagagagaatgataaataaatgattaaaataaattattttgatga 5052125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 19473049 - 19473107
Alignment:
Q  153 tgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaa 211  Q
    ||||||||||| |||||| ||||||| || | || |||||||||||||||| |||||||    
T  19473049 tgtattttagaggagagaaaatgatacatgaatgattaaaataaattatttagatgaaa 19473107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 29544163 - 29544216
Alignment:
Q  156 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||| ||||||| || | || |||||||||||||||| |||||    
T  29544163 attttagatgagagaaaatgataaatgaatgattaaaataaattatttagatga 29544216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 46079341 - 46079394
Alignment:
Q  156 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||||||||||  || | || |||||||||||||||| |||||    
T  46079341 attttagatgagagagaatgatcaatgaatgattaaaataaattatttagatga 46079394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 52673199 - 52673252
Alignment:
Q  156 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||||||||||  || | |  ||||||||||||||||||||||    
T  52673199 attttagatgagagagaatgatgaatgaataattaaaataaattattttgatga 52673252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 34305891 - 34305824
Alignment:
Q  142 gatgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||| |||||| |||||||||||||||||||||||||||| |||| |||||||| |||||||||||||    
T  34305891 gatggctttagagtattttagatgagagagaatgatagatgagtgattaaaatatattattttgatga 34305824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 10688698 - 10688645
Alignment:
Q  156 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||||||||||  || | || |||||||||||||||| |||||    
T  10688698 attttagatgagagagaatgatgaatgaatgattaaaataaattatttagatga 10688645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 42681827 - 42681888
Alignment:
Q  146 actttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgat 207  Q
    |||||| ||| ||||| | || |||||||||||||| |||  ||||||||||||||||||||    
T  42681827 actttaatgtcttttatacgaaagagaatgatagatgagtaattaaaataaattattttgat 42681888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 22715803 - 22715867
Alignment:
Q  142 gatgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttga 206  Q
    ||||||||||||||||||||||||| ||||| |||||||| | || |||||||||||||||||||    
T  22715803 gatgactttagtgtattttagatgaaagagagtgatagataaatgattaaaataaattattttga 22715867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 32204845 - 32204785
Alignment:
Q  143 atgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattt 203  Q
    ||||| ||||||||||||||||||||||  ||||||||| | || ||||||||||||||||    
T  32204845 atgacattagtgtattttagatgagagaagatgatagataaatgattaaaataaattattt 32204785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 23021266 - 23021207
Alignment:
Q  146 actttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgat 207  Q
    |||||| |||||||||||||||||||  |||||||| | || ||||||||||||||||||||    
T  23021266 actttattgtattttagatgagagag--tgatagataaatgattaaaataaattattttgat 23021207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 33957474 - 33957527
Alignment:
Q  148 tttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattat 201  Q
    |||||| |||||||||||||| |||||||||||| | || ||||||||||||||    
T  33957474 tttagtttattttagatgagaaagaatgatagatgaatgattaaaataaattat 33957527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 40591105 - 40591048
Alignment:
Q  156 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaaga 213  Q
    ||||||||||| | |||||| ||||| | || |||||||||||||||| |||||||||    
T  40591105 attttagatgaaatagaatgttagataaatgattaaaataaattatttagatgaaaga 40591048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 43279305 - 43279245
Alignment:
Q  148 tttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||| ||||  |||||||||||||| | || ||||||||||||||||| ||||    
T  43279305 tttagtgtatttt-gatggaagagaatgatagatgaatgattaaaataaattattttaatga 43279245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 4213829 - 4213891
Alignment:
Q  144 tgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttga 206  Q
    |||||||| ||||||||||||||||||||| |||| || |||| |||||||||||||||||||    
T  4213829 tgactttaatgtattttagatgagagagaacgatatatgagtgattaaaataaattattttga 4213891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 3950296 - 3950353
Alignment:
Q  156 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaaga 213  Q
    |||||||||||||||||||||| ||| | || ||||||||||||||||||||||||||    
T  3950296 attttagatgagagagaatgatcgatgaatgattaaaataaattattttgatgaaaga 3950353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 46325580 - 46325644
Alignment:
Q  144 tgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||||| |||||||||||||||||||| | || ||||||||| ||||||||||||    
T  46325580 tgactttagtgtatttt-gatgagagagaatgatagatgaatgattaaaataagttattttgatga 46325644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 49315723 - 49315790
Alignment:
Q  144 tgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaa 211  Q
    |||||||  |||||||  |||||||||||||| ||||| |||| ||||||||||||||||||||||||    
T  49315723 tgactttcatgtatttaggatgagagagaatggtagatgagtgattaaaataaattattttgatgaaa 49315790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 19431382 - 19431444
Alignment:
Q  147 ctttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||||||||||||||||||||| |||||||| ||| | || |||||||||||||||| |||||    
T  19431382 ctttagtgtattttagatgagacagaatgatggatgaatgattaaaataaattatttagatga 19431444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 46325514 - 46325450
Alignment:
Q  144 tgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||||  |||||||| ||||||||||| | || ||||||||||||||||||||||    
T  46325514 tgactttagtgtatttg-gatgagagggaatgatagatgaatgattaaaataaattattttgatga 46325450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 26056910 - 26056823
Alignment:
Q  127 ggtgactttgag-ttcgatgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaaga 213  Q
    |||||||||||| || | ||| ||||||||||||||||||||| ||| |||||||| | |  ||||||||||||||||| || |||||    
T  26056910 ggtgactttgagatttggtgattttagtgtattttagatgagatagagtgatagataaataattaaaataaattattttaataaaaga 26056823  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 44448492 - 44448546
Alignment:
Q  149 ttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattt 203  Q
    ||||||||||||||||| |||||||||||| || | || ||||||||||||||||    
T  44448492 ttagtgtattttagatgggagagaatgatatatgaatgattaaaataaattattt 44448546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 48914986 - 48915039
Alignment:
Q  156 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||||||||||  || | || ||||||||||||||||||||||    
T  48914986 attttagatgagagagaatgatgaatgaatgattaaaataaattattttgatga 48915039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 48915377 - 48915430
Alignment:
Q  156 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||||||||||  || | || ||||||||||||||||||||||    
T  48915377 attttagatgagagagaatgatgaatgaatgattaaaataaattattttgatga 48915430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 11872181 - 11872242
Alignment:
Q  148 tttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||||||| ||||||||||   | | || ||| ||||||||||||||||||    
T  11872181 tttagtgtattttagatgaaagagaatgatgattgaatgattataataaattattttgatga 11872242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 49177483 - 49177427
Alignment:
Q  157 ttttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaagat 214  Q
    |||||||||||||| |||||| ||| | || |||||||||||||||| ||||||||||    
T  49177483 ttttagatgagagaaaatgat-gatgaatgattaaaataaattatttagatgaaagat 49177427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 3622195 - 3622256
Alignment:
Q  148 tttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||||||||||||||||||| |||||||||| |  |||| ||||||||||||||||||||||    
T  3622195 tttagtgtattttagatgagtgagaatgatatacgagtgattaaaataaattattttgatga 3622256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 3622318 - 3622381
Alignment:
Q  146 actttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||||||||||||||| |||||||||||||||| |  |||  ||||||||||||||||||||||    
T  3622318 actttagtgtattttatatgagagagaatgatatacgagtaattaaaataaattattttgatga 3622381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 34928884 - 34928827
Alignment:
Q  156 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaaga 213  Q
    ||||||||||||||||||||||| || | || |||||||||||||||| |||||||||    
T  34928884 attttagatgagagagaatgataaatgaatgattaaaataaattatttagatgaaaga 34928827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 8230766 - 8230832
Alignment:
Q  143 atgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||||||||||||||||||||||| ||||| ||||   | | || ||||||||||||||||||||||    
T  8230766 atgactttagtgtattttagatgaaagagagtgatgattaaatgattaaaataaattattttgatga 8230832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 19824675 - 19824621
Alignment:
Q  155 tattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||||||||| ||||| | || |||||||||||||||| |||||    
T  19824675 tattttagatgagagagaatgttagatgaatgattaaaataaattatttagatga 19824621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 22029842 - 22029904
Alignment:
Q  147 ctttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||| ||||||||||||||||||||| | ||| | || |||||||||||||||| |||||    
T  22029842 ctttagtttattttagatgagagagaatgttggatgaatgattaaaataaattatttggatga 22029904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 33953225 - 33953165
Alignment:
Q  149 ttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||||||||||||||||| | ||| | |  |||||||||||||||| |||||    
T  33953225 ttagtgtattttagatgagagagaatggtggatgaataattaaaataaattatttagatga 33953165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 9956694 - 9956644
Alignment:
Q  159 ttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    ||||||||||||  |||||| || |||| ||||||||||||||||||||||    
T  9956694 ttagatgagagaagatgataaatgagtgattaaaataaattattttgatga 9956644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 14281809 - 14281858
Alignment:
Q  155 tattttagatgagagagaatgatagatcagtg-cttaaaataaattattt 203  Q
    ||||||||||||||||||||||||||| | ||  ||||||||||||||||    
T  14281809 tattttagatgagagagaatgatagatgaatgtattaaaataaattattt 14281858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 33922856 - 33922905
Alignment:
Q  149 ttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaat 198  Q
    |||||||||| ||||||||||||||||||| || | || |||||||||||    
T  33922856 ttagtgtattctagatgagagagaatgataaatgaatgattaaaataaat 33922905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 17250466 - 17250521
Alignment:
Q  153 tgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||||||| ||||| |||||||||||||| | || ||||| ||||||||||||||||    
T  17250466 tgtatttt-gatgaaagagaatgatagatgaatgattaaagtaaattattttgatga 17250521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 37179740 - 37179704
Alignment:
Q  142 gatgactttagtgtattttagatgagagagaatgata 178  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  37179740 gatgactttagtgtattttagatgagacagagtgata 37179704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 31675 - 31608
Alignment:
Q  142 gatgactttagtgtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 209  Q
    |||| ||||||||||||||||| |||||||||| |||||| | || |||||||||||||||| |||||    
T  31675 gatgtctttagtgtattttagacgagagagaataatagatgaatgattaaaataaattatttagatga 31608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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