View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_low_9 (Length: 557)
Name: NF19776_low_9
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 130 - 451
Target Start/End: Original strand, 15328387 - 15328707
Alignment:
| Q |
130 |
attttgaagatcactttgtaaatgtttctcatatttggtaattggtaacatttgaagatcacagaaaatc-aaggtgagaaacactttacatgctttgtc |
228 |
Q |
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| T |
15328387 |
attttgaagatcactttgaaaatgtttgtcatatttggtaattggtaacatttgac--tga-agcaattagaaagtgaaaaacactttacgtgctttgtc |
15328483 |
T |
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| Q |
229 |
ttgtcacatatgatatcattcataccaagtagcaaagaagtttgatgatgaatgctaaattaagatagttggaggggaaaa-caatacaagggctttaaa |
327 |
Q |
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| T |
15328484 |
ttgtcacgtatgatatcattcatactaagtagcaaagaagtttgatgatgaatgctaaattaagatagttggaggggaaaaacaatataagggctttaaa |
15328583 |
T |
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| Q |
328 |
gttatggacttggaactctaattgtttcattccattgcatccacgtttgttttctcctacatgggccgtggagaaaggatttgaggcattttaatatcag |
427 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||| |
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| T |
15328584 |
gttaaggacttggaactctaattgtttcattccattgcatccacgtttgttttttcctacatggactgtggggaaaggatttgaggcattttaatatcag |
15328683 |
T |
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| Q |
428 |
atttgagttttgaccctctaagcc |
451 |
Q |
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| T |
15328684 |
atttgagttttgaccctttaagcc |
15328707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 15328281 - 15328318
Alignment:
| Q |
24 |
tcaacaacacataacaatgacccaaactgcctacatac |
61 |
Q |
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| T |
15328281 |
tcaacaacacataacaatgacccaaactgcctacatac |
15328318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 489
Target Start/End: Original strand, 15328700 - 15328732
Alignment:
| Q |
457 |
tttaagccttaatatcatgaatttggtgttcta |
489 |
Q |
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| T |
15328700 |
tttaagccttaacatcatgaatttggtgttcta |
15328732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 488
Target Start/End: Complemental strand, 12655643 - 12655581
Alignment:
| Q |
423 |
atcagatttgagttttgaccctctaagcccctcatttaagccttaatatcatgaatttggtgttct |
488 |
Q |
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|||||||||||||| | |||| || |||||||||||||||||||| ||| |||||||||||||| |
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| T |
12655643 |
atcagatttgagttat---cctcgaatcccctcatttaagccttaatgtcaagaatttggtgttct |
12655581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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