View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19777_high_1 (Length: 621)
Name: NF19777_high_1
Description: NF19777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19777_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 14 - 621
Target Start/End: Complemental strand, 48358173 - 48357581
Alignment:
| Q |
14 |
caaaggatggtctagtggatggagttccatcccaacaaaggcgtataaggtcaatcaattctcccaaatgctcaccatcatcccttgacggaagtgtagg |
113 |
Q |
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| T |
48358173 |
caaaggatggtctagtggatggagttccatcccaacaaaggcgtataaggtcaatcaattctcccaaatgctcaccatcatcccttgacggaagtgtagg |
48358074 |
T |
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| Q |
114 |
ccgcagcttaccctctaccacttccatagcaatctaacaacgtattcataaagaaaaatgttacaattaaaaagagtaagactttcttctagttttatag |
213 |
Q |
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| T |
48358073 |
ccgcagcttaccctctaccacttccatagcaatctaacaacgtattcataaataaaaatgttacaattaaaaagagtaagactttcttctagttttatag |
48357974 |
T |
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| Q |
214 |
ccaagaaattataacaagaattgctcatgatcaatatgatgatgatacgtaccttggcaggaccatattctgtctcaatgtagggatgttttcctgttag |
313 |
Q |
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| T |
48357973 |
ccaagaaattata-------ttgctcatgatcaatatgatgatgatac----cttggcaggaccatattctgtctcaatgtagggatgttttcctgttag |
48357885 |
T |
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| Q |
314 |
aatctcgttcaatatgactccaaaactgtatacatcacatttttcattataaggctcacatcgtatcacctctggtgacatatacacatatgttcctgaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48357884 |
aatctcgttcaatatgactccaaaactgtatacatcacatttttcattataaggctcacatcgtatcacctctggtgacatatacacatatgttcctgaa |
48357785 |
T |
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| Q |
414 |
aatgtgaaaacataaaagtgcatggtcttagcgtcacaacaatacatatttttatcatttatcaatcaatcaatacatgtccatatttattgttaaactt |
513 |
Q |
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| T |
48357784 |
aatgtgaaaacataaaagtgcatggtcttagcgtcagaacaatacatatttttatcatttatcaat----caatacatgtccatatttattgttaaactt |
48357689 |
T |
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| Q |
514 |
gcctgtttctccggtaagagccatttctccatcccctaagaaacgagcatgtccaaaatcagccactctaacatgcaagttaaagtccaagaaaatgttg |
613 |
Q |
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| T |
48357688 |
gcctgtttctccggtaagagccatttctccatcccctaagaaacgagcatgtccaaaatcagccactctaacatgcaagttaaagtccatgaaaatgttg |
48357589 |
T |
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