View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19777_high_11 (Length: 323)
Name: NF19777_high_11
Description: NF19777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19777_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 44568077 - 44568371
Alignment:
| Q |
17 |
gatagcttttctcgttgctcttatcttggataatactgtaccgggcagtaaacaagaacgtgagctatacggttggtccaaacctaatgatgccagagaa |
116 |
Q |
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| T |
44568077 |
gatagcttttctcgttgctcttatcttggataatactgtaccgggcagtaaacaagaacgtgagctatacggttggtccaaacctaatgatgccagagaa |
44568176 |
T |
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| Q |
117 |
gatcctttcattgttagtgaatatgggtttccggcgagagttggtcggtgtttccgatgggtgaagtgggttggcttctgagtgacagtgctctcgttag |
216 |
Q |
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| T |
44568177 |
gatcctttcattgttagtgaatatgggttgccggcgagagttggtcggtgtttccgatgggtgaagtgggttggcttctgagtgacagtgctctcgttag |
44568276 |
T |
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| Q |
217 |
ttgatcatgttcagtatatgaatgttgttcaactgtccgaggtaccgcctcagtttaggtctcgtattgtttcatgggtagactatttttcatat |
311 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44568277 |
ttgatcatgttcagtatatgaatgtttttcaactgtccgaggtaccgcctcagtttaggtctcgtattgtttcatgggtagactatttttcatat |
44568371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 36027480 - 36027201
Alignment:
| Q |
17 |
gatagcttttctcgttgctcttatcttggataatactgtaccgggcagtaaacaagaacgtgagctatacggttggtccaaacctaatgatgccagagaa |
116 |
Q |
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|||||||||||| || || |||||||||||||||||||||| |||||||| |||||||| | |||||| |||||| ||||| ||| ||| ||| | |
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| T |
36027480 |
gatagcttttcttgtcgccgttatcttggataatactgtacctggcagtaagcaagaacgcggagtatacgtttggtcggaacctgatgttgctagaaga |
36027381 |
T |
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| Q |
117 |
gatcctttcattgttagtgaatatgggtttccggcgagagttggtcggtgtttccgatgggtgaagtgggttggcttctgagtgacagtgctctcgttag |
216 |
Q |
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|| ||| |||| | || |||||||| || ||||||||||||| |||| ||||||||||||||||||| | ||| |||||| ||||||| | |
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| T |
36027380 |
gagcctgctattgccaaagactatgggttgccaatgagagttggtcggattttcagatgggtgaagtgggttggtctgtgaatgacaggagtctcgttgg |
36027281 |
T |
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| Q |
217 |
ttgatcatgttcagtatatgaatgttgttcaactgtccgaggtaccgcctcagtttaggtctcgtattgtttcatgggtag |
297 |
Q |
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||| ||| || |||||||||||| | |||||||||| ||||||| | ||||| || |||||| ||||| |||||||| |
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| T |
36027280 |
ctgaccatttttggtatatgaatgtcg-tcaactgtccaaggtaccacatcagtccagatctcgttttgttgaatgggtag |
36027201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 20127518 - 20127566
Alignment:
| Q |
17 |
gatagcttttctcgttgctcttatcttggataatactgtaccgggcagt |
65 |
Q |
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|||||| ||||| |||||| ||||| |||||||||||||||| |||||| |
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| T |
20127518 |
gatagcgtttcttgttgctgttatcctggataatactgtacctggcagt |
20127566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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