View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19777_high_3 (Length: 470)
Name: NF19777_high_3
Description: NF19777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19777_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 76 - 214
Target Start/End: Complemental strand, 3578588 - 3578450
Alignment:
| Q |
76 |
ggttaaaaatgaagggaaagaagacggagttttaatttagtcttgatttattttattttaatgtgtgaaatttaacgcgtacataatgacaattcacacg |
175 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
3578588 |
ggttaaaaatgaagggaaagaagacggggttttaatttagtcttgatttattttattttaatgtgtgaaatttagcgcgtgcataatgacaattcacacg |
3578489 |
T |
|
| Q |
176 |
cgtccctatattttcgtacggtaatatccgtaccaaata |
214 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
3578488 |
cgtccgtaaattttcgtacggtaatatccgtaccaaata |
3578450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3578688 - 3578615
Alignment:
| Q |
1 |
gaaagaatactttctttctgcacctaaaaaagaaggacaggtgtacaaatgaggggttttaatacatgtcacat |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
3578688 |
gaaagaatactttctttctgcacctaaaaaagaaggacatatgtacaaatgaggggttttaatatatgtcacat |
3578615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 8e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 76 - 214
Target Start/End: Original strand, 45218679 - 45218817
Alignment:
| Q |
76 |
ggttaaaaatgaagggaaagaagacggagttttaatttagtcttgatttattttattttaatgtgtgaaatttaacgcgtacataatgacaattcacacg |
175 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
45218679 |
ggttaaaaatgaagggaaagaagaccgggttttaatttagtcttgatttattttattttaatgtgtgaaatttagcgcgttcataatgataattcacacg |
45218778 |
T |
|
| Q |
176 |
cgtccctatattttcgtacggtaatatccgtaccaaata |
214 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
45218779 |
cgtccgtaaattttcgtacggtaatatccgtaccaaata |
45218817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 45218576 - 45218639
Alignment:
| Q |
1 |
gaaagaatactttctttctgcacctaaaaaagaaggacaggtgtacaaatgaggggttttaata |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45218576 |
gaaagaatactttctttctgcacctaaaaaagaaggacaaatgtacaaatgaggggttttaata |
45218639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 76 - 202
Target Start/End: Complemental strand, 3564821 - 3564696
Alignment:
| Q |
76 |
ggttaaaaatgaagggaaagaagacggagttttaatttagtcttgatttattttattttaatgtgtgaaatttaacgcgtacataatgacaattcacacg |
175 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
3564821 |
ggttaaaaatgaagggaa-gaagactgggttttaatttagtcttgatttattttattttaatttgtgaaatttagcgcgtgcataatgacaattcacacg |
3564723 |
T |
|
| Q |
176 |
cgtccctatattttcgtacggtaatat |
202 |
Q |
| |
|
| ||| || |||||||||||||||||| |
|
|
| T |
3564722 |
catccgtaaattttcgtacggtaatat |
3564696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3564921 - 3564849
Alignment:
| Q |
1 |
gaaagaatactttctttctgcacctaaaaaagaaggacaggtgtacaaatgaggggtttta--atacatgtcacat |
74 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
3564921 |
gaaagaatactttctttctgcacctaaaa---aaggacagatgtacaaatgaggggttttaatatacatgtcacat |
3564849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 306 - 423
Target Start/End: Original strand, 24933043 - 24933162
Alignment:
| Q |
306 |
actgacatgcattgacgttcttcaattcttagaagttacaaaatttaataataatgaagtacta---tttcaaattatttcaaaattgatatttattgtg |
402 |
Q |
| |
|
||||||||||||| | |||||||| ||| ||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||| |||| |
|
|
| T |
24933043 |
actgacatgcattaatgttcttcagttcg-agaagttacaaaatttaataataatgacgtactactatttgaaattatttcaaaattgatatttaatgtg |
24933141 |
T |
|
| Q |
403 |
tgtcagattaattagtttaag |
423 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
24933142 |
tgtcagattaattagtttaag |
24933162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 24932924 - 24932985
Alignment:
| Q |
225 |
tataaaaaatgacagtaaataacaacatttaatagtatatctctaagtacagacatatattt |
286 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
24932924 |
tatagaaaatggcagtaaataacaacatttaatagtatatatctaagtacagacatacattt |
24932985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University