View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19777_high_4 (Length: 459)
Name: NF19777_high_4
Description: NF19777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19777_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 13 - 442
Target Start/End: Complemental strand, 37620793 - 37620341
Alignment:
| Q |
13 |
gagaaactatacggtatgaattagatc--aaatctacctaattattggaggtttgtttgatgtggtatgtgctttggaagagattt-------------- |
96 |
Q |
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| T |
37620793 |
gagaaactatacggtatgaattagaccccaaatctacctaattattggaggtttgtttgatgtggtatgtgctttggaagagatttcgttaaaagtttga |
37620694 |
T |
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| Q |
97 |
-------taattttgtgtgggaggacatagtctgcattggaggctaagaatttgataccatccatgattaagagattttgttccttaatctctttaaatt |
189 |
Q |
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| T |
37620693 |
gagattttaattttgtgtgggaggacatagtctgcattggaggctaagaatttgataccatccatgattaagagattttgttccttaatctctttaaatt |
37620594 |
T |
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| Q |
190 |
gttttctaatctcttgatatgacacctcgattgaattgtcatgaagttttctaaaaggctcttttgaaaactatgatgcctaccaatttgttggagagtt |
289 |
Q |
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| T |
37620593 |
gttttctaatctcttgatatgacacctcgattgaattgtcatgaagttttctaaaaggctcttttgaaaactatgatgcctaccaatttgttggagagtt |
37620494 |
T |
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| Q |
290 |
tgaatagtgggagattttggattgtgttaaattcgctaggcttccagttccaaccatggttggggaagttgtttccccttggagaattattcgaattatt |
389 |
Q |
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| T |
37620493 |
tgaatagtgggagattttggattgtgttaaattcgctaggcttccagttccaaccatggttggggaagttgtttccccttggagaattattcgaattatc |
37620394 |
T |
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| Q |
390 |
atgattataaattaaccctctgactattgtttagatcacatcccttatcgttc |
442 |
Q |
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| T |
37620393 |
atgattataaattaaccctctgactattgtttagatcacatcctttatcgttc |
37620341 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 13967627 - 13967521
Alignment:
| Q |
132 |
gctaagaatttgataccatccatgattaagagattttgttccttaatctctttaaattgttttctaatctcttgatatgacacctcgattgaattgtcat |
231 |
Q |
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||||| |||| |||| ||||||| || |||||||||||||| ||||| ||||| |||||| | || ||||||| ||||| | | ||||| ||| |||| |
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| T |
13967627 |
gctaaaaattggatagcatccattataaagagattttgttctttaatatctttgaattgtctccttatctctt--catgacgcttagattgtattatcat |
13967530 |
T |
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| Q |
232 |
gaagttttc |
240 |
Q |
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| T |
13967529 |
gaagttttc |
13967521 |
T |
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