View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19777_high_7 (Length: 360)
Name: NF19777_high_7
Description: NF19777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19777_high_7 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: scaffold0021 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 161404 - 161746
Alignment:
| Q |
1 |
taggttgttatgttgtttgagaggtatttgtgatcagaggtgtgtgtatattttcatgggggaatgaaatttttgcatcgggttatgacaaatattagtg |
100 |
Q |
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| T |
161404 |
taggttgttatgttgtttgagaggtatttgtgatcagaggtgtgtgtatattttcatggggtaatgaaatttttgcatcgggttatgacaaatattagtg |
161503 |
T |
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| Q |
101 |
caatagcataacttattaaacatgcttattgataataaatcccacccaagtttaggaacatacttcatatcatgcaaggaacttattgtcatcaaacatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
161504 |
caatagcataacttattaaacatgcttattgataataaattccacccaagtttaggaacatacttcatatcatgcaaggaacttattgtcatcaaacatc |
161603 |
T |
|
| Q |
201 |
ataagacaaactcaactcatatcttaaatcttgcaagcttcactattttcaaagcgaacaattccaccttgttcgagctttatagtctcaaataattcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
161604 |
ataagacaaactcaactcatatcttaaatcttgcaagcttcactattttcaaagtgaacaattccaccttgttcgagctttatagtctcaaataattcct |
161703 |
T |
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| Q |
301 |
ttttcattggacacatgtgaaaggagcatctacagttcaatgc |
343 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |
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| T |
161704 |
ttttcattggacacatgtgaaaggagcatccacagttcaatgc |
161746 |
T |
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