View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19777_high_8 (Length: 349)

Name: NF19777_high_8
Description: NF19777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19777_high_8
NF19777_high_8
[»] chr5 (6 HSPs)
chr5 (14-313)||(7669627-7669928)
chr5 (216-314)||(19459652-19459750)
chr5 (154-314)||(37523232-37523391)
chr5 (154-314)||(37563404-37563563)
chr5 (216-300)||(19131319-19131404)
chr5 (154-314)||(37687972-37688132)
[»] chr4 (6 HSPs)
chr4 (216-314)||(33634656-33634754)
chr4 (216-314)||(22523376-22523474)
chr4 (216-292)||(21295013-21295089)
chr4 (216-312)||(9392559-9392655)
chr4 (216-308)||(20446433-20446525)
chr4 (161-206)||(32038293-32038338)
[»] chr2 (2 HSPs)
chr2 (216-314)||(43973415-43973513)
chr2 (152-196)||(27577761-27577805)
[»] chr3 (4 HSPs)
chr3 (216-313)||(28405008-28405105)
chr3 (216-313)||(36841376-36841473)
chr3 (216-314)||(11150039-11150137)
chr3 (216-314)||(46250091-46250189)
[»] chr7 (3 HSPs)
chr7 (217-310)||(17040295-17040388)
chr7 (216-275)||(32228217-32228276)
chr7 (154-281)||(38603815-38603941)
[»] chr8 (4 HSPs)
chr8 (216-313)||(26802174-26802272)
chr8 (216-314)||(10011181-10011280)
chr8 (216-314)||(36396718-36396816)
chr8 (154-196)||(43141094-43141136)
[»] chr1 (2 HSPs)
chr1 (216-312)||(33299660-33299756)
chr1 (216-275)||(7412199-7412258)
[»] chr6 (1 HSPs)
chr6 (216-314)||(4295807-4295906)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 7669627 - 7669928
Alignment:
14 caaaggacaaactcaattaatcatcatattcctattcacatgtacaccgtgaggacaaagtctaaagaataaattcgaaaataaagagagaggaatagag 113  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
7669627 caaaggacagactcaattagttatcatattcctattcacatgtacatcgtgaggacaaagtctaaagaataaattcgaaaataaagagagaggaatagag 7669726  T
114 tgagaccccatttgttttggnnnnnnnncttnnnnnnntaactttcttcatttttaagtgtttgtttagaatatttggaaaaaaatattttat--nnnnn 211  Q
    |||| |||||||||||||||        |||       |||||||||||||||||||||||||||||||| | ||| |||||||| |||||||           
7669727 tgaggccccatttgttttggttttttttcttaaaaaaataactttcttcatttttaagtgtttgtttagattttttagaaaaaaacattttataaaaaaa 7669826  T
212 nnnnctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatctttttcaacaacaaggcggtaatacatgtacatgttaaaac 311  Q
        ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||    
7669827 aaaactattttgaccctaaaatgaaaagctattaagattaattctttttaaaatatgtctttttcaacaataaggaggtaatacatgtacatgttaaaac 7669926  T
312 tc 313  Q
    ||    
7669927 tc 7669928  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 19459652 - 19459750
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatctttttcaacaacaaggcggtaatacatgtacatgttaaaactca 314  Q
    ||||||||| ||||||||||| |||||||| |||||  | || | ||||| |||||||||||||||||||| ||||| || |||||| |||||||||||    
19459652 ctattttgatcctaaaatgaaaagctattaggattagcttttctcaaaatctatctttttcaacaacaaggaggtaacacgtgtacaagttaaaactca 19459750  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 314
Target Start/End: Complemental strand, 37523391 - 37523232
Alignment:
154 actttcttcatttttaagtgtttgtttagaatatttggaaaaaaatattttatnnnnnnnnnctattttgaccctaaaatgaagagctattaagattaat 253  Q
    ||||| ||||||||||||||||||||||| || ||| ||||||   |||||||         ||||||||| | ||||||||| |||||||| |||||      
37523391 acttttttcatttttaagtgtttgtttaggatttttagaaaaatc-attttatcaaaaacatctattttgatcataaaatgaaaagctattaggattagc 37523293  T
254 tctttttaaaatatatctttttcaacaacaaggcggtaatacatgtacatgttaaaactca 314  Q
    | || | ||||| ||| |||||||||||||||| ||||| ||||||||| |||||||||||    
37523292 ttttctcaaaatctatttttttcaacaacaaggaggtaacacatgtacaagttaaaactca 37523232  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 314
Target Start/End: Complemental strand, 37563563 - 37563404
Alignment:
154 actttcttcatttttaagtgtttgtttagaatatttggaaaaaaatattttatnnnnnnnnnctattttgaccctaaaatgaagagctattaagattaat 253  Q
    ||||| ||||||||||||||||||||||| || ||| ||||||   |||||||         ||||||||| | ||||||||| |||||||| |||||      
37563563 acttttttcatttttaagtgtttgtttaggatttttagaaaaatc-attttatcaaaaacatctattttgatcataaaatgaaaagctattaggattagc 37563465  T
254 tctttttaaaatatatctttttcaacaacaaggcggtaatacatgtacatgttaaaactca 314  Q
    | || | ||||| ||| |||||||||||||||| ||||| ||||||||| |||||||||||    
37563464 ttttctcaaaatctatttttttcaacaacaaggaggtaacacatgtacaagttaaaactca 37563404  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 300
Target Start/End: Original strand, 19131319 - 19131404
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatata-tctttttcaacaacaaggcggtaatacatgta 300  Q
    ||||||||||||||||||||| |||||||| |||||| | |||||||||| || | |||||||| ||||| | ||||| |||||||    
19131319 ctattttgaccctaaaatgaaaagctattaggattaactttttttaaaatctattgtttttcaaaaacaaagaggtaacacatgta 19131404  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 314
Target Start/End: Complemental strand, 37688132 - 37687972
Alignment:
154 actttcttcatttttaagtgtttgtttagaatatttggaaaaaaatattttatnnnnnnnnnctattttgaccctaaaatgaagagctattaagattaat 253  Q
    ||||| ||||||||||||||||||||||| || ||| ||||||   |||||||         ||||||||| | ||||||||| |||||||| |||||      
37688132 acttttttcatttttaagtgtttgtttaggatttttagaaaaatc-attttataaaaaaaatctattttgatcataaaatgaaaagctattaggattagc 37688034  T
254 tctttttaaaatatatctttttcaacaaca-aggcggtaatacatgtacatgttaaaactca 314  Q
    | || | ||||| ||| ||||||||||| | ||| ||||| ||||||||| |||||||||||    
37688033 ttttctcaaaatctatttttttcaacaaaagaggaggtaacacatgtacaagttaaaactca 37687972  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 33634754 - 33634656
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatctttttcaacaacaaggcggtaatacatgtacatgttaaaactca 314  Q
    ||||||||| ||||||||||| |||||||| |||||  | || ||||||| ||| |||||||||||||||| ||||| ||||||||| |||||||||||    
33634754 ctattttgatcctaaaatgaaaagctattaggattagcttttcttaaaatctatttttttcaacaacaaggaggtaacacatgtacaagttaaaactca 33634656  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 22523474 - 22523376
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatctttttcaacaacaaggcggtaatacatgtacatgttaaaactca 314  Q
    ||||||||||||||||||||| |||||||  |||||  | || | ||||| ||| |||||||| ||||||| ||||| | ||||||| |||||||||||    
22523474 ctattttgaccctaaaatgaaaagctatttggattagcttttctcaaaatctatttttttcaaaaacaaggaggtaacaaatgtacaagttaaaactca 22523376  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 21295013 - 21295089
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatctttttcaacaacaaggcggtaa 292  Q
    ||||||||||||||||||||| |||||||| |||||| | || ||||||| ||| |||||| | ||||||| |||||    
21295013 ctattttgaccctaaaatgaaaagctattaggattaacttttcttaaaatctatttttttctaaaacaaggaggtaa 21295089  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 9392655 - 9392559
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatctttttcaacaacaaggcggtaatacatgtacatgttaaaact 312  Q
    ||||||||||  ||||||||| |||||||| |||||  | || | ||||| ||| |||||||||||||| | | ||| |||||||||||||| ||||    
9392655 ctattttgacattaaaatgaaaagctattaggattagcttttctcaaaatttatttttttcaacaacaaagagataacacatgtacatgttagaact 9392559  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 308
Target Start/End: Complemental strand, 20446525 - 20446433
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatctttttcaacaacaaggcggtaatacatgtacatgttaa 308  Q
    ||||||||| ||||||||||| |||||||| |||||| | || ||| |||  |  |||||||| ||||||| ||||| ||||||| |||||||    
20446525 ctattttgatcctaaaatgaaaagctattaggattaacttttcttataatcaagttttttcaaaaacaaggaggtaacacatgtagatgttaa 20446433  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 32038338 - 32038293
Alignment:
161 tcatttttaagtgtttgtttagaatatttggaaaaaaatattttat 206  Q
    ||||||||||||||||||||||||| ||| ||| ||| ||||||||    
32038338 tcatttttaagtgtttgtttagaatttttagaacaaattattttat 32038293  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 43973415 - 43973513
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatctttttcaacaacaaggcggtaatacatgtacatgttaaaactca 314  Q
    ||||||||||||||||||||  |||||||| |||||  | || | ||||| ||| |||||||| ||||||| ||||| |||||||||||||||||||||    
43973415 ctattttgaccctaaaatgagaagctattaggattagcttttctcaaaatctatttttttcaaaaacaaggaggtaacacatgtacatgttaaaactca 43973513  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 27577761 - 27577805
Alignment:
152 taactttcttcatttttaagtgtttgtttagaatatttggaaaaa 196  Q
    ||||||| ||||||||||||||||||||||| || ||| ||||||    
27577761 taacttttttcatttttaagtgtttgtttaggatttttagaaaaa 27577805  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 313
Target Start/End: Complemental strand, 28405105 - 28405008
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatctttttcaacaacaaggcggtaatacatgtacatgttaaaactc 313  Q
    ||||||||||||||||||||| |||||||| |||||  | || | ||| | ||| |||||||| ||||||| ||||| ||||||||||||||||||||    
28405105 ctattttgaccctaaaatgaaaagctattaggattagcttttctcaaattctatttttttcaaaaacaaggaggtaacacatgtacatgttaaaactc 28405008  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 313
Target Start/End: Complemental strand, 36841473 - 36841376
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatctttttcaacaacaaggcggtaatacatgtacatgttaaaactc 313  Q
    |||||| || ||||||||||| |||| ||| |||||| | || | ||||| ||| |||||||||||||||| | ||| ||||||||| ||||||||||    
36841473 ctatttggatcctaaaatgaaaagctgttaggattaacttttctcaaaatctatttttttcaacaacaaggagataacacatgtacaagttaaaactc 36841376  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 11150137 - 11150039
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatctttttcaacaacaaggcggtaatacatgtacatgttaaaactca 314  Q
    ||||||||||||||||||||| |||||||| | |||  | || | |||||  || |||||||||||||||| | ||| |||||| ||||||| ||||||    
11150137 ctattttgaccctaaaatgaaaagctattagggttagcttttctcaaaatccatttttttcaacaacaaggagataacacatgtgcatgttagaactca 11150039  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 46250189 - 46250091
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatctttttcaacaacaaggcggtaatacatgtacatgttaaaactca 314  Q
    ||||||||||| ||||||||| |||||||| |||||  | || | ||||| ||| |||||||| ||||||| ||||   |||||||| |||||||||||    
46250189 ctattttgaccataaaatgaaaagctattaggattaccttttctcaaaatctatttttttcaaaaacaaggaggtagctcatgtacaagttaaaactca 46250091  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 17040388 - 17040295
Alignment:
217 tattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatctttttcaacaacaaggcggtaatacatgtacatgttaaaa 310  Q
    |||||| ||||||||||||| |||||||| |||||| | || ||||||| ||| |||||||| ||||||| ||||| ||||| ||| |||||||    
17040388 tattttaaccctaaaatgaaaagctattaggattaacttttcttaaaatctatttttttcaaaaacaaggaggtaacacatgaacaagttaaaa 17040295  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 32228276 - 32228217
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatcttttt 275  Q
    ||||||||| ||||||||||| |||||||| ||||| || |||||||||||||| |||||    
32228276 ctattttgatcctaaaatgaaaagctattaggattatttttttttaaaatatattttttt 32228217  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 281
Target Start/End: Original strand, 38603815 - 38603941
Alignment:
154 actttcttcatttttaagtgtttgtttagaatatttggaaaaaaatattttatnnnnnnnnnctattttgaccctaaaatgaagagctattaagattaat 253  Q
    ||||| ||||||||||||||||||||||| || ||| ||||||   |||||||         ||||||||||||||||||||| |||||||| |||||      
38603815 acttttttcatttttaagtgtttgtttaggatttttagaaaaatc-attttatcaaaaaaatctattttgaccctaaaatgaaaagctattaggattagc 38603913  T
254 tctttttaaaatatatctttttcaacaa 281  Q
    | || | ||||| ||| |||||||||||    
38603914 ttttctcaaaatctatttttttcaacaa 38603941  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 313
Target Start/End: Original strand, 26802174 - 26802272
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatata-tctttttcaacaacaaggcggtaatacatgtacatgttaaaactc 313  Q
    ||||||||||||||||||||| |  ||||| |||||| | |||| ||||| || | |||||||| ||||||| ||||| ||||||||| ||||||||||    
26802174 ctattttgaccctaaaatgaaaatttattaggattaacttttttcaaaatttattatttttcaaaaacaaggaggtaagacatgtacaagttaaaactc 26802272  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 10011280 - 10011181
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatata-tctttttcaacaacaaggcggtaatacatgtacatgttaaaactca 314  Q
    ||||||||||||||||||||| |||||||| |||||  | || | ||||| || | |||||||||||||||  ||||| ||||||| | |||||||||||    
10011280 ctattttgaccctaaaatgaaaagctattaggattagcttttctcaaaatctattttttttcaacaacaagaaggtaacacatgtataagttaaaactca 10011181  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 36396816 - 36396718
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatctttttcaacaacaaggcggtaatacatgtacatgttaaaactca 314  Q
    ||||||||||||||||||||| |||||||| |||||  | || | ||||| ||| ||| ||||  |||||  ||||| ||||||||| |||||||||||    
36396816 ctattttgaccctaaaatgaaaagctattaggattagcttttctcaaaatctatttttctcaaacacaagaaggtaacacatgtacaagttaaaactca 36396718  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 43141094 - 43141136
Alignment:
154 actttcttcatttttaagtgtttgtttagaatatttggaaaaa 196  Q
    ||||| |||||||||||||||||||||||||| ||| ||||||    
43141094 acttttttcatttttaagtgtttgtttagaatttttagaaaaa 43141136  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 33299756 - 33299660
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatctttttcaacaacaaggcggtaatacatgtacatgttaaaact 312  Q
    ||||||||||||||||||||| |||||||| ||||| || || | ||||| ||  |||||||||||||||| | ||| | |||| ||||||| ||||    
33299756 ctattttgaccctaaaatgaaaagctattaggattagtttttctcaaaatctacttttttcaacaacaaggagataacatatgtgcatgttagaact 33299660  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 7412258 - 7412199
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatcttttt 275  Q
    ||||||||||||||||||||| |||||||| ||||| ||||| | ||||| ||| |||||    
7412258 ctattttgaccctaaaatgaaaagctattaggattagttcttctcaaaatctattttttt 7412199  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 4295906 - 4295807
Alignment:
216 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaat-atatctttttcaacaacaaggcggtaatacatgtacatgttaaaactca 314  Q
    ||||||||| ||||||||||| | ||||||||| ||  | |||| ||||| |  | ||||||||| |||||| ||||| ||||||||| |||||||||||    
4295906 ctattttgatcctaaaatgaaaaactattaagagtagcttttttcaaaatcaattttttttcaactacaaggaggtaacacatgtacaagttaaaactca 4295807  T

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