View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19777_low_12 (Length: 331)

Name: NF19777_low_12
Description: NF19777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19777_low_12
NF19777_low_12
[»] chr2 (8 HSPs)
chr2 (6-154)||(39107861-39108007)
chr2 (202-260)||(41683205-41683263)
chr2 (285-331)||(3691347-3691393)
chr2 (285-331)||(2191303-2191349)
chr2 (285-331)||(2606614-2606660)
chr2 (293-331)||(10706617-10706655)
chr2 (285-331)||(24093514-24093560)
chr2 (227-263)||(39101822-39101858)
[»] chr1 (5 HSPs)
chr1 (200-263)||(9954480-9954544)
chr1 (285-331)||(4288398-4288444)
chr1 (285-331)||(5683519-5683565)
chr1 (293-331)||(9880756-9880794)
chr1 (293-331)||(31436349-31436387)
[»] chr6 (1 HSPs)
chr6 (285-331)||(7645940-7645986)
[»] chr8 (4 HSPs)
chr8 (293-331)||(21006088-21006126)
chr8 (293-331)||(26997835-26997873)
chr8 (293-331)||(10047564-10047602)
chr8 (293-330)||(16662438-16662475)
[»] chr5 (2 HSPs)
chr5 (293-331)||(31588312-31588350)
chr5 (285-331)||(35383326-35383372)
[»] chr4 (5 HSPs)
chr4 (285-331)||(35469021-35469067)
chr4 (293-331)||(26168078-26168116)
chr4 (285-331)||(30608591-30608637)
chr4 (293-331)||(35166832-35166870)
chr4 (285-331)||(51906506-51906552)
[»] chr3 (3 HSPs)
chr3 (293-331)||(50732311-50732349)
chr3 (293-331)||(50780506-50780544)
chr3 (285-331)||(22814382-22814428)
[»] chr7 (2 HSPs)
chr7 (285-321)||(5029544-5029580)
chr7 (293-326)||(11992795-11992828)
[»] scaffold0063 (1 HSPs)
scaffold0063 (285-331)||(34878-34924)
[»] scaffold0009 (1 HSPs)
scaffold0009 (293-331)||(108088-108126)


Alignment Details
Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 6 - 154
Target Start/End: Original strand, 39107861 - 39108007
Alignment:
Q  6 cggataacataccgaaaatattcaggagnnnnnnnttaaccaagagttttatttaagtttatattagtctgtttaatgcgcaagataagatagagacata 105  Q
    ||||||||||| |||||||||| |||||       |||||||| ||||||||  |||||||||  ||| || || |||||||||| ||||||||||||||    
T  39107861 cggataacatatcgaaaatattgaggagaaaaaaattaaccaaaagttttat--aagtttataagagtttgcttgatgcgcaagaaaagatagagacata 39107958  T
Q  106 atataataataaattgagtaaggataggcaaagatagtcacataatatt 154  Q
    |||||  ||| |||||| |||||||||  ||||||||||||||||||||    
T  39107959 atatagcaatgaattgaataaggatagaaaaagatagtcacataatatt 39108007  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 41683205 - 41683263
Alignment:
Q  202 tatttggaagattaattgatgcaaaatcaatctttcacaatcctatgatagcattttat 260  Q
    ||||| |||||  ||||||||||||||||| |||||||||||||||| |||||||||||    
T  41683205 tatttagaagaccaattgatgcaaaatcaacctttcacaatcctatggtagcattttat 41683263  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 3691347 - 3691393
Alignment:
Q  285 cgttaaaaaattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||| ||||||||||||| ||| |||||||||||||||||||||||    
T  3691347 cgttagaaaattaacagcatggactaattttgataacggagataaaa 3691393  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 2191349 - 2191303
Alignment:
Q  285 cgttaaaaaattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||||| |||||||| || ||| |||||||||||||||||||||||    
T  2191349 cgttaaagaattaacaacatggactaattttgataacggagataaaa 2191303  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 2606614 - 2606660
Alignment:
Q  285 cgttaaaaaattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||||| ||||||||||| ||| ||||||||||| |||||||||||    
T  2606614 cgttaaagaattaacagcatggactaattttgatagcggagataaaa 2606660  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 10706617 - 10706655
Alignment:
Q  293 aattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  10706617 aattaacagcagggactagttttgataacggagataaaa 10706655  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 24093514 - 24093560
Alignment:
Q  285 cgttaaaaaattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||||| |||||| |||| ||| |||||||||||||||||||||||    
T  24093514 cgttaaagaattaagagcatggactaattttgataacggagataaaa 24093560  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 39101822 - 39101858
Alignment:
Q  227 atcaatctttcacaatcctatgatagcattttatttt 263  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  39101822 atcaatctttcataatcctatgatggcattttatttt 39101858  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 9954480 - 9954544
Alignment:
Q  200 attatttggaagattaattgatgcaaaatcaatc-tttcacaatcctatgatagcattttatttt 263  Q
    |||||||||||||  |||||||||||||| || | ||||||||||||||||||||||||||||||    
T  9954480 attatttggaagaccaattgatgcaaaattaaacctttcacaatcctatgatagcattttatttt 9954544  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 4288398 - 4288444
Alignment:
Q  285 cgttaaaaaattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||||| ||||||||||| |||||||||||||||||| | ||||||    
T  4288398 cgttaaagaattaacagcatggattaattttgataacgaatataaaa 4288444  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 5683519 - 5683565
Alignment:
Q  285 cgttaaaaaattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||| |||||||||||||| || ||||||||||| |||||||||||    
T  5683519 cgttagaaaattaacagcagtgactaattttgataccggagataaaa 5683565  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 9880756 - 9880794
Alignment:
Q  293 aattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  9880756 aattaacagcagggactaattttgataacagagataaaa 9880794  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 31436349 - 31436387
Alignment:
Q  293 aattaacagcagggattaattttgataacggagataaaa 331  Q
    |||||||||||| || |||||||||||||||||||||||    
T  31436349 aattaacagcagagactaattttgataacggagataaaa 31436387  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 7645940 - 7645986
Alignment:
Q  285 cgttaaaaaattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||    
T  7645940 cgttagaaaattaacagcagggactaattttgataacggagataaaa 7645986  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 21006088 - 21006126
Alignment:
Q  293 aattaacagcagggattaattttgataacggagataaaa 331  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  21006088 aattaacagcagggatcaattttgataacggagataaaa 21006126  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 26997835 - 26997873
Alignment:
Q  293 aattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  26997835 aattaacagcagggactaattttgataacggagataaaa 26997873  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 10047602 - 10047564
Alignment:
Q  293 aattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  10047602 aattaacagcatggactaattttgataacggagataaaa 10047564  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 16662438 - 16662475
Alignment:
Q  293 aattaacagcagggattaattttgataacggagataaa 330  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  16662438 aattaacaacagggattaattttgagaacggagataaa 16662475  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 31588312 - 31588350
Alignment:
Q  293 aattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  31588312 aattaacagcagggactaattttgataacggagataaaa 31588350  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 35383372 - 35383326
Alignment:
Q  285 cgttaaaaaattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||| ||||||||||||| ||| ||||||||||||||| |||||||    
T  35383372 cgttagaaaattaacagcatggactaattttgataacggggataaaa 35383326  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 35469021 - 35469067
Alignment:
Q  285 cgttaaaaaattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||||| |||||||| || |||||||||||||||||||||||||||    
T  35469021 cgttaaagaattaacaacatggattaattttgataacggagataaaa 35469067  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 26168116 - 26168078
Alignment:
Q  293 aattaacagcagggattaattttgataacggagataaaa 331  Q
    |||||||||||| || |||||||||||||||||||||||    
T  26168116 aattaacagcagagactaattttgataacggagataaaa 26168078  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 30608591 - 30608637
Alignment:
Q  285 cgttaaaaaattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||||| |||||||| ||| || |||||||||||||||||||||||    
T  30608591 cgttaaataattaacaacagtgactaattttgataacggagataaaa 30608637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 35166832 - 35166870
Alignment:
Q  293 aattaacagcagggattaattttgataacggagataaaa 331  Q
    |||||||||||| || |||||||||||||||||||||||    
T  35166832 aattaacagcagagactaattttgataacggagataaaa 35166870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 51906552 - 51906506
Alignment:
Q  285 cgttaaaaaattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||||| | |||||| |||||| |||||||||||||||||||||||    
T  51906552 cgttaaagagttaacatcagggactaattttgataacggagataaaa 51906506  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 50732349 - 50732311
Alignment:
Q  293 aattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  50732349 aattaacagcagggactaattttgataacggagataaaa 50732311  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 50780506 - 50780544
Alignment:
Q  293 aattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  50780506 aattaacagcagggactaattttgataacggagataaaa 50780544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 22814428 - 22814382
Alignment:
Q  285 cgttaaaaaattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||| |||||||| |||||||| |||||||||||||| ||||||||    
T  22814428 cgttagaaaattaatagcagggactaattttgataacgaagataaaa 22814382  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 5029580 - 5029544
Alignment:
Q  285 cgttaaaaaattaacagcagggattaattttgataac 321  Q
    ||||| |||||||||||||||||||||||||||||||    
T  5029580 cgttagaaaattaacagcagggattaattttgataac 5029544  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 326
Target Start/End: Complemental strand, 11992828 - 11992795
Alignment:
Q  293 aattaacagcagggattaattttgataacggaga 326  Q
    ||||||||||||||||||||||||||||| ||||    
T  11992828 aattaacagcagggattaattttgataacagaga 11992795  T

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Target: scaffold0063 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 34924 - 34878
Alignment:
Q  285 cgttaaaaaattaacagcagggattaattttgataacggagataaaa 331  Q
    ||||| |||||||| ||||| || |||||||||||||||||||||||    
T  34924 cgttagaaaattaatagcagagactaattttgataacggagataaaa 34878  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 108088 - 108126
Alignment:
Q  293 aattaacagcagggattaattttgataacggagataaaa 331  Q
    |||||||||||| || |||||||||||||||||||||||    
T  108088 aattaacagcagagactaattttgataacggagataaaa 108126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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