View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19777_low_17 (Length: 280)
Name: NF19777_low_17
Description: NF19777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19777_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 24296095 - 24295850
Alignment:
| Q |
20 |
accaataacaccatgatgatgggtcataagatgcacggtatgatgcacatgacattcttctggggcaaagatgctttaattctcttcaacaattggccta |
119 |
Q |
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| T |
24296095 |
accaataacaccatgatgatgggtcataagatgcacggtatgatgcacatgacattcttctggggcaaagacgctttaattctcttcaacaattggccta |
24295996 |
T |
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| Q |
120 |
atggtgataccggtatgtatgtattagcgttgatccttgttttcgtcatggccgtactcattgaattactctcacgtacacggttcattaaacccggttc |
219 |
Q |
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| T |
24295995 |
acggtgataccggtatgtatgtattagcgttgatccttgttttcgtcatggccgtactcattgaattactctcacgtacacggttcattaaacccggttc |
24295896 |
T |
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| Q |
220 |
aaaccatgttgctgccggtttgtttcagacacttttgcatgttctt |
265 |
Q |
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| T |
24295895 |
aaaccatgttgctgccggtttgtttcagacacttttgcatgttctt |
24295850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 24511365 - 24511127
Alignment:
| Q |
20 |
accaataacaccatgatgatgggtcataagatgcacggtatgatgcacatgacattcttctggggcaaagatgctttaattctcttcaacaattggccta |
119 |
Q |
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| T |
24511365 |
accaatgacactatgatgatgggtca---gatgcatgacatgatgcacatgacatttttctggggtaaagatgcattgattctctttgataactggcctg |
24511269 |
T |
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| Q |
120 |
atggtgataccggtatgtatgtattagcgttgatccttgttttcgtcatggccgtactcattgaattactctcacgtacacggttcattaaacccggttc |
219 |
Q |
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| T |
24511268 |
ctggtaattctggtaagtatgtattggccttgatccttgttttcgccatgtccatactcatcgagtttctctcaagcacccggttcattaaacccggttc |
24511169 |
T |
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| Q |
220 |
aaaccatgttgctgccggtttgtttcagacacttttgcatgt |
261 |
Q |
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| T |
24511168 |
aaaccctattgtggccggtctagttcagacccttctgcatgt |
24511127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 24508956 - 24508867
Alignment:
| Q |
29 |
accatgatgatgggtcataagatgcacggtatgatgcacatgacattcttctggggcaaagatgctttaattctcttcaacaattggcct |
118 |
Q |
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| T |
24508956 |
accatgatgatgagccttaagatgcagggcatgatacacatgacattcttctggggtaaggattcgttgattctctttaacaattggcct |
24508867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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