View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19777_low_20 (Length: 242)
Name: NF19777_low_20
Description: NF19777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19777_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 3139606 - 3139831
Alignment:
| Q |
1 |
ttttttggtgcctaatgaacttgtatacaattgtcttccataatcttcactcatataatataacactaatacattaaatactaacaatattaatattcat |
100 |
Q |
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|||||| |||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
3139606 |
tttttttgtgcctaatgaacttgaatacaattgtcatccataatcttcactcgtataatataacactaatacattaattactaacaatattaacattcat |
3139705 |
T |
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| Q |
101 |
ttgtnnnnnnnnnnnntagtaacattcattttgg-nnnnnnnnnnctcttaactcttcaatctgaaagcatatccac-atacaaattggggaccatggat |
198 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
3139706 |
ttgt-aaaaaaaaaaatagtaacattcattttggaaaaaaaaaaactcttaactcttcaatctgaaagcatatccacaacacaaattggggaccatggat |
3139804 |
T |
|
| Q |
199 |
agtggtggagaaaacaaagtagcatat |
225 |
Q |
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||||||||||||||||||||||||||| |
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| T |
3139805 |
agtggtggagaaaacaaagtagcatat |
3139831 |
T |
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