View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19777_low_21 (Length: 239)
Name: NF19777_low_21
Description: NF19777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19777_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 4573711 - 4573875
Alignment:
| Q |
11 |
aatgttaaaatatgtcttgaaatctcatgttgaaagnnnnnnnactttactattgcccccatgcgctaggcacagttgtttgttgtttttagcatgttgc |
110 |
Q |
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| T |
4573711 |
aatgttaaaatatgtcttgaaatctcatgttgaaagtttttttactttactattgcccccatgcgctaggcgcagttgtttgttgtttttagcatgtttc |
4573810 |
T |
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| Q |
111 |
tattttgtagcttgcacgaggcgaagggtatagctgatttagcaggtgcgcgtcatgatctatat |
175 |
Q |
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| T |
4573811 |
tattttgtagcttgcatgaggcgaagggtatagctgatttagcaggtgtgcgtcatgatctatat |
4573875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 4559971 - 4560101
Alignment:
| Q |
68 |
cccatgcgctaggcacagttgtttgttgtttttagcatgttgctattttgtagcttgcacgaggcgaagggtatagctgattta---gcaggtgcgcgtc |
164 |
Q |
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| T |
4559971 |
cccatgcactaggcgcagttgtttgttgttttcagcttgttg-taatttgtagcttgcgcaaggcgaaggatatagctgactgaggcgcaggtgtgcatc |
4560069 |
T |
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| Q |
165 |
atgatctatatagataagcattttttgcatcagt |
198 |
Q |
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| T |
4560070 |
aagatc--tatagataagcaggttttgcatcagt |
4560101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 4559905 - 4559940
Alignment:
| Q |
11 |
aatgttaaaatatgtcttgaaatctcatgttgaaag |
46 |
Q |
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| T |
4559905 |
aatgttaaaatatttcttgaaatctcatgttgaaag |
4559940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 4566785 - 4566820
Alignment:
| Q |
11 |
aatgttaaaatatgtcttgaaatctcatgttgaaag |
46 |
Q |
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| T |
4566785 |
aatgttaaaatatgtcttgaaatctcatgttaaaag |
4566820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 4566843 - 4566916
Alignment:
| Q |
61 |
tattgcccccatgcgctaggcacagttgtttgttgtttttagcatgttgctattttgtagcttgcacgaggcga |
134 |
Q |
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| T |
4566843 |
tattgtccccatgcgctgggcgaagctgtttgctgttttcatcatgttgctattttgttgcttggatgaggcga |
4566916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 16684305 - 16684249
Alignment:
| Q |
91 |
tgttgtttttagcatgttgctattttgtagcttgcacgaggcgaagggtatagctga |
147 |
Q |
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| T |
16684305 |
tgttgttttcagcatattgctattttgtagcttacgcgaggcaaatggtatagctga |
16684249 |
T |
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