View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19777_low_8 (Length: 392)

Name: NF19777_low_8
Description: NF19777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19777_low_8
NF19777_low_8
[»] chr4 (14 HSPs)
chr4 (1-372)||(4335426-4335797)
chr4 (1-186)||(4123754-4123939)
chr4 (182-352)||(4123564-4123734)
chr4 (199-353)||(4361380-4361534)
chr4 (1-181)||(4344727-4344907)
chr4 (1-150)||(4320473-4320619)
chr4 (1-166)||(4361158-4361323)
chr4 (182-372)||(4320230-4320417)
chr4 (182-368)||(4344932-4345121)
chr4 (1-128)||(6498399-6498526)
chr4 (1-128)||(6588069-6588196)
chr4 (1-110)||(6753041-6753150)
chr4 (1-128)||(6545321-6545448)
chr4 (1-89)||(6621419-6621507)
[»] chr6 (23 HSPs)
chr6 (10-126)||(5066569-5066685)
chr6 (10-126)||(5157503-5157619)
chr6 (1-126)||(5073783-5073908)
chr6 (1-126)||(5102489-5102614)
chr6 (1-121)||(5243793-5243913)
chr6 (1-121)||(5344942-5345062)
chr6 (31-126)||(5354489-5354584)
chr6 (10-132)||(5096798-5096920)
chr6 (10-123)||(5128295-5128408)
chr6 (1-126)||(5181802-5181927)
chr6 (1-121)||(5176820-5176940)
chr6 (10-126)||(5426000-5426116)
chr6 (1-121)||(5278647-5278767)
chr6 (7-121)||(5690039-5690153)
chr6 (10-87)||(5350484-5350561)
chr6 (10-123)||(5370661-5370774)
chr6 (1-126)||(5447668-5447793)
chr6 (28-126)||(5434143-5434241)
chr6 (30-121)||(5397060-5397151)
chr6 (27-111)||(5383433-5383517)
chr6 (211-286)||(5181633-5181708)
chr6 (1-126)||(5284264-5284389)
chr6 (270-334)||(5397324-5397388)
[»] chr5 (5 HSPs)
chr5 (13-126)||(8877702-8877815)
chr5 (31-111)||(12599062-12599142)
chr5 (5-111)||(20838717-20838823)
chr5 (5-111)||(20812362-20812468)
chr5 (28-110)||(15803019-15803101)
[»] chr7 (2 HSPs)
chr7 (1-123)||(36213707-36213829)
chr7 (1-111)||(18935467-18935577)
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-126)||(8775-8900)
[»] chr3 (5 HSPs)
chr3 (61-126)||(47986747-47986812)
chr3 (61-126)||(47996034-47996099)
chr3 (61-126)||(48005321-48005386)
chr3 (61-126)||(48014606-48014671)
chr3 (28-121)||(6905806-6905899)
[»] chr8 (7 HSPs)
chr8 (7-111)||(3262637-3262740)
chr8 (55-121)||(3407323-3407389)
chr8 (5-111)||(31175932-31176038)
chr8 (28-121)||(3391536-3391629)
chr8 (28-111)||(3314966-3315049)
chr8 (28-110)||(3364277-3364359)
chr8 (30-111)||(3325010-3325091)
[»] scaffold0286 (1 HSPs)
scaffold0286 (1-89)||(6740-6828)


Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 4335426 - 4335797
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  4335426 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccttctataattt 4335525  T
Q  101 ggtcttggatggtaccaacaaataatgtctcacccgctgttcaaacagctgttggaatgtcatcccatatttctttgaatgtatcatctgttttcaaagt 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  4335526 ggtcttggatggtaccaacaaataatgtctcaccagctgttcaaacagctgttggaatgtcaccccatgtttctttgaatgtatcatctgttttcaaagt 4335625  T
Q  201 ccttcctaaacttcaatgcctttggtttgagtgtgaatcagaacttcaactttcacaagacacaacaagaattttgaatgcattatgtgcagcaaattct 300  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4335626 ccttcctaaacttcaatgcctttggtttgagtgtggatcagaacttcaactttcacaagacacaacaagaattttgaatgcattatgtgcagcaaattct 4335725  T
Q  301 aaggaattgaaatcaactgcaactacatcacaagtattagatgtgaagacttcactaattgaatgtcgcagt 372  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4335726 aaggaattgaaatcaactgcaactacatcacaagtatcagatgtgaagacttcactaattgaatgtcgcagt 4335797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 4123939 - 4123754
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    ||||||||||||||||| ||||||| ||||||||||||||| | ||| ||| ||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  4123939 acaaaagtgcccttttcggtagtaaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctctcgtgatgtgtttccttctatcattt 4123840  T
Q  101 ggtcttggatggtaccaacaaataatgtctcacccgctgttcaaacagctgttggaatgtcatcccatatttctttgaatgtatca 186  Q
     |||||||||| |||||||||||||| || |||||||||||||||||||||| ||||||||||||| | |||||||| ||| ||||    
T  4123839 cgtcttggatgttaccaacaaataatctcccacccgctgttcaaacagctgtcggaatgtcatcccttgtttctttgcatgcatca 4123754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 182 - 352
Target Start/End: Complemental strand, 4123734 - 4123564
Alignment:
Q  182 tatcatctgttttcaaagtccttcctaaacttcaatgcctttggtttgagtgtgaatcagaacttcaactttcacaagacacaacaagaattttgaatgc 281  Q
    |||| ||| ||||||  |||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  4123734 tatcgtctattttcagtgtccttccaaaacttcagtgcctttggttggagtgtggatcagaacttcaactttcacaggacacaacaagaattttgaatgc 4123635  T
Q  282 attatgtgcagcaaattctaaggaattgaaatcaactgcaactacatcacaagtattagatgtgaagactt 352  Q
     ||| || || ||||||| |||| |||| |||||| ||||||||| ||||||||||   ||||||||||||    
T  4123634 tttaagttcaacaaattccaagggattggaatcaattgcaactacgtcacaagtatccaatgtgaagactt 4123564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 199 - 353
Target Start/End: Original strand, 4361380 - 4361534
Alignment:
Q  199 gtccttcctaaacttcaatgcctttggtttgagtgtgaatcagaacttcaactttcacaagacacaacaagaattttgaatgcattatgtgcagcaaatt 298  Q
    |||||||| || |||||| |||||||| | || |||| ||||||||||||||||||||| |||||| ||| |||||||||||| ||| ||||| ||||||    
T  4361380 gtccttccgaagcttcaaagcctttggctggaatgtggatcagaacttcaactttcacaggacacagcaataattttgaatgctttaagtgcaacaaatt 4361479  T
Q  299 ctaaggaattgaaatcaactgcaactacatcacaagtattagatgtgaagacttc 353  Q
    | ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||    
T  4361480 ccaaggaattggaatcaactgcaactacatcacaagtatcagaggtgaagacttc 4361534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 4344727 - 4344907
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||||||| |||||||||||||||| ||||||| ||||||| | ||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  4344727 acaaaagtacccttttcagtagtaaggtcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcattt 4344826  T
Q  101 ggtcttggatggtaccaacaaataatgtctcacccgctgttcaaacagctgttggaatgtcatcccatatttctttgaatg 181  Q
    |||||||||||  ||||||||||  | |||| ||| || |||||||| ||| ||| |||||||| | | ||||||| ||||    
T  4344827 ggtcttggatgtcaccaacaaatggtctctcgcccacttttcaaacaactgctgggatgtcatcgcttgtttctttaaatg 4344907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 4320619 - 4320473
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||||||| ||||||||| |||||| ||||||||||||||| | ||| ||| ||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  4320619 acaaaagttcccttttcattagtaaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcattt 4320520  T
Q  101 ggtcttggatggtaccaacaaataatgtctcacccgctgttcaaacagct 150  Q
    |||||||||||    || |||||||| | ||||||||| |||||||||||    
T  4320519 ggtcttggatg---tcaccaaataatctgtcacccgcttttcaaacagct 4320473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 4361158 - 4361323
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||||||| ||||||||| | ||||  |||||| ||||||| | ||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  4361158 acaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcattt 4361257  T
Q  101 ggtcttggatggtaccaacaaataatgtctcacccgctgttcaaacagctgttggaatgtcatccc 166  Q
     ||||||||||  ||||||||||  | |||| ||| || |||||||| ||| ||| ||||||||||    
T  4361258 cgtcttggatgtcaccaacaaatggtctctcgcccacttttcaaacaactgctgggatgtcatccc 4361323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 182 - 372
Target Start/End: Complemental strand, 4320417 - 4320230
Alignment:
Q  182 tatcatctgttttcaaagtccttcctaaacttcaatgcctttggtttgagtgtgaatcagaacttcaactttcacaagacacaacaagaattttgaatgc 281  Q
    |||||||| ||| ||  |||||||| || |||||| |||||||| |    |||| ||||||||||||||| ||||||||  ||||| ||||| |||||||    
T  4320417 tatcatctatttccattgtccttccaaagcttcaaagcctttggctgacatgtggatcagaacttcaactatcacaagatgcaacacgaattgtgaatgc 4320318  T
Q  282 attatgtgcagcaaattctaaggaattgaaatcaactgcaactacatcacaagtattagatgtgaagacttcactaattgaatgtcgcagt 372  Q
     ||| ||| ||||| ||||| ||||||| ||||||||||||||||||||||||||  |||||||||   |||| |||||||||||||||||    
T  4320317 tttaagtgtagcaagttctatggaattggaatcaactgcaactacatcacaagtaccagatgtgaa---ttcattaattgaatgtcgcagt 4320230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 182 - 368
Target Start/End: Original strand, 4344932 - 4345121
Alignment:
Q  182 tatcatctgttttcaaagtccttcctaaacttcaatgcctttggtttgagtgtgaatcagaacttcaactttcacaagacacaacaagaattttgaatgc 281  Q
    |||||||| ||| ||| ||| |||| || |||||| | |||||| | || |||| ||||||||||||||| ||||||||  ||||||| |||||| ||||    
T  4344932 tatcatctatttccaatgtctttccgaagcttcaaagtctttggctcgaatgtggatcagaacttcaactatcacaagatgcaacaagtattttgcatgc 4345031  T
Q  282 attatgtgcagcaaattctaaggaattgaaatcaactgcaactacatcacaagtattagatgtgaa---gacttcactaattgaatgtcg 368  Q
     ||| ||||| ||| ||||| ||||||| ||||||||||||||||||| ||||| | |||||||||   ||||||| |||||||||||||    
T  4345032 cttaagtgcaacaagttctacggaattggaatcaactgcaactacatcccaagtgtcagatgtgaagacgacttcattaattgaatgtcg 4345121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 6498526 - 6498399
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||||||| ||||||||| ||||||  |||||||||||||| || || |||||  |||| | | ||||||| || |||||||| ||||| ||| |||||     
T  6498526 acaaaagttcccttttcaatagtaagatcaaaaagcattggatacatttctttaggtggatttaaaggattttcacgtgatgtatttccttctctcattc 6498427  T
Q  101 ggtcttggatggtaccaacaaataatgt 128  Q
    |||||||||||  |||| ||||||||||    
T  6498426 ggtcttggatgtcaccatcaaataatgt 6498399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 6588196 - 6588069
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    ||||||||||| |||||| |||||| |   ||||||||||| ||||| ||||| ||||| | ||||||||| || |||||||| || || ||| |||||     
T  6588196 acaaaagtgccattttcaatagtaaggatgaaaagcattggatatatttctttttgtggctttgaaggattttcacgtgatgtattcccttctctcattc 6588097  T
Q  101 ggtcttggatggtaccaacaaataatgt 128  Q
    |||||||||||   ||| ||||||||||    
T  6588096 ggtcttggatgtcgccatcaaataatgt 6588069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 6753041 - 6753150
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||||||||||||||||| ||||||  |  ||||||||||| ||||| |||||  |||| | ||||||||| || |||||||| || || ||| |||||     
T  6753041 acaaaagtgcccttttcaatagtaagattgaaaagcattggatatatttcttttcgtggctttgaaggattttcacgtgatgtattcccttctctcattc 6753140  T
Q  101 ggtcttggat 110  Q
    ||||||||||    
T  6753141 ggtcttggat 6753150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 6545448 - 6545321
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||||||||||||||||| |||| |  |  ||||||||||| ||||| |||||  |||| | ||||||||| || |||||||| || || ||| |||||     
T  6545448 acaaaagtgcccttttcaatagttagattgaaaagcattggatatatttcttttcgtggctttgaaggattttcacgtgatgtattcccttctctcattc 6545349  T
Q  101 ggtcttggatggtaccaacaaataatgt 128  Q
    |||||||| ||  |||| ||||||||||    
T  6545348 ggtcttggctgtcaccatcaaataatgt 6545321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 6621507 - 6621419
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttcc 89  Q
    |||||||| ||||||||| |||||   || |||| |||||| ||||| ||||| ||||| | ||||||||| || || |||||||||||    
T  6621507 acaaaagttcccttttcaatagtacgatctaaaaacattggatatatttctttatgtggatttgaaggattttcacgggatgtgtttcc 6621419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 5066685 - 5066569
Alignment:
Q  10 cccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttgga 109  Q
    |||||||||||||||| ||||||||||||||| || ||||||||||| || |||||||||||||| |||||||||||||| |||||||||| ||||||||    
T  5066685 cccttttcagtagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcgcgtgatgtgtttccatctatcattttgtcttgga 5066586  T
Q  110 tggtaccaacaaataat 126  Q
    ||  |||||||||||||    
T  5066585 tgtcaccaacaaataat 5066569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 5157619 - 5157503
Alignment:
Q  10 cccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttgga 109  Q
    |||||||||||||||| ||||||||||||||| || ||||||||| | || ||||||||||| || |||||||||||||| |||||||||||||||||||    
T  5157619 cccttttcagtagtaaggtcaaaaagcattggatacatctctttgggcggctatgaaggattttctcgtgatgtgtttccatctatcatttggtcttgga 5157520  T
Q  110 tggtaccaacaaataat 126  Q
    ||  |||||||||||||    
T  5157519 tgtcaccaacaaataat 5157503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 5073908 - 5073783
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||| |||||||||||||||||||| ||| ||||||||||| ||||| |||||||| || |||||||||||||| ||||||||||| || || |||||||    
T  5073908 acaagagtgcccttttcagtagtaaggtcgaaaagcattggatatatttctttgtgcggctatgaaggattctcacgtgatgtgttcccatcgatcattt 5073809  T
Q  101 ggtcttggatggtaccaacaaataat 126  Q
    |||||||||||  ||| |||||||||    
T  5073808 ggtcttggatgtcaccgacaaataat 5073783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 5102614 - 5102489
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||| |||||||||||||||||||| ||||||||||||||| ||||||||| | ||||| ||||||||| | || | |||||||||||| |||||||| |    
T  5102614 acaacagtgcccttttcagtagtaaggtcaaaaagcattggatatatctctctatgtggctatgaaggactttcacatgatgtgtttccatctatcatct 5102515  T
Q  101 ggtcttggatggtaccaacaaataat 126  Q
    |||||||||||  |||||||||||||    
T  5102514 ggtcttggatgtcaccaacaaataat 5102489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 5243913 - 5243793
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||| |||||||||||||||||||| |||||||||||| || ||||| ||||||||||| ||||||||||| || || ||||| ||||| |||||||| |    
T  5243913 acaagagtgcccttttcagtagtaaggtcaaaaagcatcggatatatttctttgtgtggctatgaaggattttcacgcgatgtatttccatctatcatct 5243814  T
Q  101 ggtcttggatggtaccaacaa 121  Q
    |||||||||||  ||||||||    
T  5243813 ggtcttggatgtcaccaacaa 5243793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 5344942 - 5345062
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||||||| ||||||| |||||||| ||||||||||||||| ||||| ||| ||||||| |||||||||||||| || ||||| ||||| |||||||| |    
T  5344942 acaaaagttccctttttagtagtaaggtcaaaaagcattggatatatttctctgtgtggctatgaaggattctcacgcgatgtatttccatctatcatct 5345041  T
Q  101 ggtcttggatggtaccaacaa 121  Q
    |||||||||||  ||||||||    
T  5345042 ggtcttggatgtcaccaacaa 5345062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 5354584 - 5354489
Alignment:
Q  31 aaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaaataat 126  Q
    ||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  5354584 aaaagcattggatatatttctttatgtggctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 5354489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 5096798 - 5096920
Alignment:
Q  10 cccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttgga 109  Q
    |||||||||||||||| ||||||||||||||| || || ||| | |||||  |||||||||| || ||||||||||||||||||||||| |||||||||     
T  5096798 cccttttcagtagtaaggtcaaaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggt 5096897  T
Q  110 tggtaccaacaaataatgtctca 132  Q
    ||  ||||||||||||| |||||    
T  5096898 tgtcaccaacaaataatctctca 5096920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 5128408 - 5128295
Alignment:
Q  10 cccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttgga 109  Q
    |||||||||||||||| ||||||||||||||| ||||||||| |||| ||  |||||||||| ||  ||||||||||||| |||||||| ||||||||||    
T  5128408 cccttttcagtagtaaggtcaaaaagcattggatatatctctctgtgcggccatgaaggattttcaagtgatgtgtttccatctatcatctggtcttgga 5128309  T
Q  110 tggtaccaacaaat 123  Q
    ||  ||||||||||    
T  5128308 tgtcaccaacaaat 5128295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 5181927 - 5181802
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||| |||||| ||||||||||||||||| ||||||||||  ||||| || |||||||| |||||||||||||| | ||||||||||||  | |||||||    
T  5181927 acaagagtgccgttttcagtagtaaagtccaaaagcattgcatatatttccttgtgtggatatgaaggattctcacatgatgtgtttccagcgatcattt 5181828  T
Q  101 ggtcttggatggtaccaacaaataat 126  Q
    |||||||||||  ||| |||||||||    
T  5181827 ggtcttggatgtcaccgacaaataat 5181802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 5176820 - 5176940
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||| ||||||||| ||| |||||| ||||||||||||||| || ||||||||||| || |||||||||||||| |||||| | ||||| || |||||||    
T  5176820 acaagagtgcccttgtcaatagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatcattt 5176919  T
Q  101 ggtcttggatggtaccaacaa 121  Q
    |||||||||||  ||||||||    
T  5176920 ggtcttggatgtcaccaacaa 5176940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 5426000 - 5426116
Alignment:
Q  10 cccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttgga 109  Q
    ||||||||||| |||| |||| |||||||||| || ||||||||||| || ||||||||||| || ||||||||||||||  | ||||||||||||||||    
T  5426000 cccttttcagtggtaatgtcacaaagcattggatacatctctttgtgcggctatgaaggattttcacgtgatgtgtttccagcgatcatttggtcttgga 5426099  T
Q  110 tggtaccaacaaataat 126  Q
    ||  |||||||||||||    
T  5426100 tgtcaccaacaaataat 5426116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 5278647 - 5278767
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||| ||||||||| ||  |||||| ||||||||||||||| || ||||||||||| || |||||||||||||| |||||| | ||||| || |||||||    
T  5278647 acaagagtgcccttgtctatagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatcattt 5278746  T
Q  101 ggtcttggatggtaccaacaa 121  Q
    |||||||||||  ||||||||    
T  5278747 ggtcttggatgtcaccaacaa 5278767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 5690153 - 5690039
Alignment:
Q  7 gtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtctt 106  Q
    |||||||||||| | |||| ||||||||||||||| ||||| ||| |||| ||  ||||||||||||| |||||| | ||||| ||||||||||||||||    
T  5690153 gtgcccttttcaattgtaaggtcaaaaagcattgggtatatttctctgtgcggacatgaaggattctcacgtgatatatttccatctatcatttggtctt 5690054  T
Q  107 ggatggtaccaacaa 121  Q
    |||||  ||||||||    
T  5690053 ggatgtcaccaacaa 5690039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 5350484 - 5350561
Alignment:
Q  10 cccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgttt 87  Q
    |||||||||||||||| ||||||||||||||| || ||||||||||| || ||||||||||| || ||||||||||||    
T  5350484 cccttttcagtagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattttcacgtgatgtgttt 5350561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 5370661 - 5370774
Alignment:
Q  10 cccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttgga 109  Q
    |||||||||||||||  ||||||||||||||| || || || ||||||||  ||| |||||| || | |||||| ||||| |||||||||||||||||||    
T  5370661 cccttttcagtagtacggtcaaaaagcattggatacatttcattgtgtggccatgtaggattttcacatgatgtttttccatctatcatttggtcttgga 5370760  T
Q  110 tggtaccaacaaat 123  Q
    ||  ||||||||||    
T  5370761 tgtcaccaacaaat 5370774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 5447668 - 5447793
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||| |||||||||||| ||||| | ||| || |||||||| ||||| |||||||| || | |||||||| ||| | |||||||||||| ||||| |||     
T  5447668 acaacagtgcccttttcggtagttaggtcgaagagcattggatatatttctttgtgcggatttgaaggatcctcgcatgatgtgtttccatctattattc 5447767  T
Q  101 ggtcttggatggtaccaacaaataat 126  Q
    |||||||||||  ||||| |||||||    
T  5447768 ggtcttggatgtcaccaagaaataat 5447793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 5434143 - 5434241
Alignment:
Q  28 tcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaaataat 126  Q
    |||||||||||||| |||||||||||||| || |||||||||||||| |  ||| | ||||| | |||||||  ||||||||||  |||||||||||||    
T  5434143 tcaaaaagcattggatatatctctttgtgcggttatgaaggattctcacacgatttatttccatttatcattcagtcttggatgtcaccaacaaataat 5434241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 5397060 - 5397151
Alignment:
Q  30 aaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaa 121  Q
    |||||||||||| | |||||||||||| || ||||||||||| ||  |||| ||||||||  ||||||||| ||||||||||  ||||||||    
T  5397060 aaaaagcattggatttatctctttgtgcggatatgaaggattttcatgtgaagtgtttccagctatcatttcgtcttggatgtcaccaacaa 5397151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 5383433 - 5383517
Alignment:
Q  27 gtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatg 111  Q
    ||||||||| ||||  ||||| |||||||| ||  ||||||||||||| |||||||||||||| || ||||||  ||||||||||    
T  5383433 gtcaaaaagtattgtatatatttctttgtgcggccatgaaggattctcacgtgatgtgtttccatccatcattaagtcttggatg 5383517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 286
Target Start/End: Complemental strand, 5181708 - 5181633
Alignment:
Q  211 cttcaatgcctttggtttgagtgtgaatcagaacttcaactttcacaagacacaacaagaattttgaatgcattat 286  Q
    |||| ||| |||||| |||||||||  ||||||||||||||||| |||||||||  |||||||||| |||| ||||    
T  5181708 cttcgatgtctttgggttgagtgtggctcagaacttcaactttctcaagacacagaaagaattttggatgctttat 5181633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 5284389 - 5284264
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||| |||||||||||||||||||| ||| ||||||||||| |||||  ||||||| || ||||| ||| | ||  | ||||||||||| |  || ||||    
T  5284389 acaagagtgcccttttcagtagtaaggtcgaaaagcattggatatattgctttgtgcggttatgagggactttcaagcgatgtgtttccattaataattt 5284290  T
Q  101 ggtcttggatggtaccaacaaataat 126  Q
     ||| ||||||  | |||||||||||    
T  5284289 tgtcatggatgtcagcaacaaataat 5284264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 5397324 - 5397388
Alignment:
Q  270 aattttgaatgcattatgtgcagcaaattctaaggaattgaaatcaactgcaactacatcacaag 334  Q
    ||||||| ||||  |||||||  |||||||||| |||||| ||||||||  ||||||||||||||    
T  5397324 aattttggatgctctatgtgctacaaattctaaagaattggaatcaactaaaactacatcacaag 5397388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 8877702 - 8877815
Alignment:
Q  13 ttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatgg 112  Q
    |||||| |||||| ||||||||||||||| ||||| |||||||| || ||||||||||| || |||||||||||||| |||||||||||||||||||||     
T  8877702 ttttcattagtaaggtcaaaaagcattggatatatttctttgtgcggctatgaaggattttcgcgtgatgtgtttccatctatcatttggtcttggatgt 8877801  T
Q  113 taccaacaaataat 126  Q
     |||||||||||||    
T  8877802 caccaacaaataat 8877815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 12599142 - 12599062
Alignment:
Q  31 aaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatg 111  Q
    ||||||||||| ||||| || |||||||| ||||||||||| || |||||||| ||||| ||| ||| |||||||||||||    
T  12599142 aaaagcattggatatatatccttgtgtggatatgaaggattatcacgtgatgtttttccttctctcaattggtcttggatg 12599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 20838717 - 20838823
Alignment:
Q  5 aagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtc 104  Q
    ||||||||| |||| ||| ||  |||||||||||||| ||||| ||  | ||||| ||||||||||| || | |||||| ||||| ||| ||||||||||    
T  20838717 aagtgccctattcaatagcaagatcaaaaagcattggatatatatcactatgtggatatgaaggattatcacatgatgtttttccttctctcatttggtc 20838816  T
Q  105 ttggatg 111  Q
    |||||||    
T  20838817 ttggatg 20838823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 20812362 - 20812468
Alignment:
Q  5 aagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtc 104  Q
    ||||||||| |||| ||| ||  |||||||||||||  ||||| ||  | ||||| || |||||||| || |||||||| ||||| ||| ||||||||||    
T  20812362 aagtgccctattcaatagcaagatcaaaaagcattgcatatatatcactatgtggatacgaaggattatcacgtgatgtttttccttctctcatttggtc 20812461  T
Q  105 ttggatg 111  Q
    |||||||    
T  20812462 ttggatg 20812468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 15803019 - 15803101
Alignment:
Q  28 tcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggat 110  Q
    |||||||||||||| ||||| ||| | ||||| ||| ||||||| || | |||||| ||||| ||| ||||| ||||||||||    
T  15803019 tcaaaaagcattggatatatatctctatgtggatataaaggattatcacatgatgtttttccttctctcattaggtcttggat 15803101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 36213829 - 36213707
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||| |||||| |||||||||||||  || |||||||| |  ||||| |||||||| || |||||||||||||| | |||||||||||| ||||||||||    
T  36213829 acaagagtgccattttcagtagtaagatctaaaagcatcgcttatatatctttgtgcggctatgaaggattctcacatgatgtgtttccatctatcattt 36213730  T
Q  101 ggtcttggatggtaccaacaaat 123  Q
    |||||||||||  ||||||||||    
T  36213729 ggtcttggatgtcaccaacaaat 36213707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 18935467 - 18935577
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||| |||||||||| |||||||||  |||||||||||||| | ||| ||  ||||||| | |||||||||  | ||| |||||||||| || || |||     
T  18935467 acaagagtgccctttgcagtagtaagatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattc 18935566  T
Q  101 ggtcttggatg 111  Q
     ||||||||||    
T  18935567 agtcttggatg 18935577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 8900 - 8775
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt 100  Q
    |||| ||||||||||||| |||||| ||||||||| ||||  ||||| |||||||| ||  ||||||||||||| |||||||||||||| |||||||||     
T  8900 acaagagtgcccttttcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccatgaaggattctcacgtgatgtgtttccatctatcatta 8801  T
Q  101 ggtcttggatggtaccaacaaataat 126  Q
     ||||||||||   ||||||||||||    
T  8800 agtcttggatgtctccaacaaataat 8775  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 47986812 - 47986747
Alignment:
Q  61 tatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaaataat 126  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  47986812 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 47986747  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 47996099 - 47996034
Alignment:
Q  61 tatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaaataat 126  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  47996099 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 47996034  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 48005386 - 48005321
Alignment:
Q  61 tatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaaataat 126  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  48005386 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 48005321  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 48014671 - 48014606
Alignment:
Q  61 tatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaaataat 126  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  48014671 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 48014606  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 6905899 - 6905806
Alignment:
Q  28 tcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaa 121  Q
    |||||||||||||  ||||| ||  | || || ||||||||||| || |||||| | ||||| ||| |||||||||||||||||  ||||||||    
T  6905899 tcaaaaagcattgtgtatatatccctatgcggatatgaaggattatcacgtgatatttttccttctctcatttggtcttggatgtcaccaacaa 6905806  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 3262740 - 3262637
Alignment:
Q  7 gtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtctt 106  Q
    ||||||| |||| ||||||  |||||||||||||| ||||| ||  | ||||| ||||| ||||| || |||||||| ||||| ||||||||||||||||    
T  3262740 gtgccctattcaatagtaagatcaaaaagcattggatatatatccctatgtggatatga-ggattttcacgtgatgtttttccctctatcatttggtctt 3262642  T
Q  107 ggatg 111  Q
    |||||    
T  3262641 ggatg 3262637  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 3407389 - 3407323
Alignment:
Q  55 tgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaa 121  Q
    ||||| ||| ||||||| || |||||||| ||||| |||||||||||||||||||||  ||||||||    
T  3407389 tgtggatatcaaggattatcacgtgatgtttttccttctatcatttggtcttggatgtcaccaacaa 3407323  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 31175932 - 31176038
Alignment:
Q  5 aagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtc 104  Q
    ||||||||| |||| ||| ||  |||||||||||||  ||||| ||| | ||||| ||||||||||| ||  |||| || ||||| ||| ||||||||||    
T  31175932 aagtgccctattcaatagcaagatcaaaaagcattgcatatatatctctatgtggatatgaaggattatcatgtgacgtttttccttctctcatttggtc 31176031  T
Q  105 ttggatg 111  Q
    |||||||    
T  31176032 ttggatg 31176038  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 3391629 - 3391536
Alignment:
Q  28 tcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaa 121  Q
    |||||||||||||| ||||| ||| | ||||| ||||||||||| || | | |||| ||||| ||| ||||| |||||||||||  ||||||||    
T  3391629 tcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgtttttccttctctcattaggtcttggatgtcaccaacaa 3391536  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 3314966 - 3315049
Alignment:
Q  28 tcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatg 111  Q
    ||||||| |||||| ||||| ||  | ||||  |||||||| || || |||||||| ||||| |||||||||||||||||||||    
T  3314966 tcaaaaaacattggatatatatccctatgtgaatatgaaggtttatcacgtgatgtttttccttctatcatttggtcttggatg 3315049  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 3364277 - 3364359
Alignment:
Q  28 tcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggat 110  Q
    |||||||||||||| ||||| ||| | ||||| ||||||||||| || | | |||| ||||| ||| ||||| ||||||||||    
T  3364277 tcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgtttttccttctctcattaggtcttggat 3364359  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 3325091 - 3325010
Alignment:
Q  30 aaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatg 111  Q
    |||||||||||| ||||| ||  | ||||| ||||||||| | || |  ||||| ||||| |||||||||||||||||||||    
T  3325091 aaaaagcattggatatatatccctctgtggatatgaaggactatcacacgatgtttttccttctatcatttggtcttggatg 3325010  T

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Target: scaffold0286 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 6740 - 6828
Alignment:
Q  1 acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttcc 89  Q
    |||||||| ||||||||| |||||   || |||| |||||| ||||| ||||| ||||| | ||||||||| || || |||||||||||    
T  6740 acaaaagttcccttttcaatagtacgatctaaaaacattggatatatttctttatgtggatttgaaggattttcacgggatgtgtttcc 6828  T

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